PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21624.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 236aa    MW: 26184.2 Da    PI: 8.5724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21624.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l+++v+++G+g +W + +++ g++R++k+c++rw++yl
       KZV21624.1 14 RGPWSPDEDSALKNYVQKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding49.97.2e-1669111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEde+++ +    G++ W+ Ia++++ gRt++++k++w++
       KZV21624.1  69 GAFTKEEDEIILTLYSNIGSR-WSVIASHLP-GRTDNDVKNHWNT 111
                      89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.877962IPR017930Myb domain
SuperFamilySSF466893.67E-2912109IPR009057Homeodomain-like
SMARTSM007175.1E-121364IPR001005SANT/Myb domain
PfamPF002493.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241569IPR009057Homeodomain-like
CDDcd001673.31E-91662No hitNo description
PROSITE profilePS5129424.44563117IPR017930Myb domain
SMARTSM007171.6E-1467115IPR001005SANT/Myb domain
PfamPF002493.4E-1469111IPR001005SANT/Myb domain
CDDcd001675.01E-1170113No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGPWSPD EDSALKNYVQ KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIKHGA FTKEEDEIIL TLYSNIGSRW SVIASHLPGR TDNDVKNHWN TKLKKKLMAA  120
QKTILSSATA DSQTTLSSAT AYSETSNLTA LARTSSEAST TNYYSENWFG NAIPAPYPQV  180
IDEQTAQILE GNGQISVPSF MRTYSDYFGF PVTADDVSGQ LWSSFFEDTG SVWSNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21624.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022883267.18e-82transcription factor RAX2-like
SwissprotQ9FKL22e-70MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2Z7AIN21e-176A0A2Z7AIN2_9LAMI; Uncharacterized protein
STRINGGLYMA17G35020.22e-75(Glycine max)
STRINGXP_009620040.19e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-73myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]