PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21614.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 276aa    MW: 30948.7 Da    PI: 8.2272
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21614.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19149182134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  KZV21614.1 149 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 182
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.33E-13143187No hitNo description
SMARTSM004016.6E-21143194IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.532147179IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.5E-16147182IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.01E-14148180No hitNo description
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
PfamPF003205.4E-17149182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNLNISPSTL ELEQISEDQD HNPQFSCRVF FDSSTGGDRT RFYNHHQCYQ PHHHHPEDDY  60
SSYHGGSPYE DDIGLKLTLW NDPMEWKPSR VEPTKMDTEE DRVIIKISTS ARNKIREEQK  120
LQPSSSLETD LSSNSCCNIV TTTPTIRVCS DCNTTKTPLW RSGPKGPKSL CNACGIRQRK  180
ARRAMAAAAA ADPPPRVSEI KVQQQNKQKI SKTGHGQDSK FKKRSKMTAS SDGSSSSLED  240
FLIKLSKNLS FHRVFPQDEK DAAILLMALS SGLVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21614.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.23e-79LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A2Z7AIM40.0A0A2Z7AIM4_9LAMI; GATA transcription factor 21
STRINGMigut.J00606.1.p2e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.15e-29cytokinin-responsive gata factor 1