PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21608.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 837aa    MW: 91261.7 Da    PI: 6.8271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21608.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06409432226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k + Cr++++ G C+ G++CkF+H+
  KZV21608.1 409 KIVYCRHYLQ-GRCHEGEKCKFSHD 432
                 5578******.*************7 PP
2zf-CCCH20.49e-07466486525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+++  tG+C++G+ C F+H
  KZV21608.1 466 PCNNYTSTGFCSRGADCLFSH 486
                 7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0033407433IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6407432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807407434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4409432IPR000571Zinc finger, CCCH-type
SMARTSM003560.0069436462IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375436463IPR000571Zinc finger, CCCH-type
SMARTSM003560.35464488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5465494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5466488IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4466486IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.535466489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSEAAALSFP PHRRRPIRSQ TYLNLVQLLS HCHADSSQLN DSSKDGGLRR GCSQSIHSNR  60
GELKSAELLV PNDILVQVTG TDKSIENAGF HDGASNDERT MVLELGCANL ATDGEEVVTH  120
PDSMSCGDLL VGGNLPGGSV FQIAKEQKTP DGVDVGSMGQ LTVDKEFSID DFSEVLDSCF  180
GGDMVSEVSK SGYSGKENNS SLEVNTSKEF ERVVQLKGME LEKLVSTSAV DEEIEEGEIY  240
VEAGACDLLI DPLSDNATSL GRIAIHTSEE NGCKEDFTCN SKDQIFPRHC AYMDKEIACV  300
KVEHILSSRP LQDIQSQRSA DDDMETQGFD AIPTYSETLP LIDVIRQKHI NDSPISAITK  360
KEEYGGTNQR NGSSAKERNA AKKRKKRAEK NRKLGVKRLK LQTVSKPKKI VYCRHYLQGR  420
CHEGEKCKFS HDTTPLTKSK PCGHFARNSC MKGDDCPYDH QLSKYPCNNY TSTGFCSRGA  480
DCLFSHKILE NQILSVTHNA SKPDLKSEQP KGQEKAGSFT ASIVSRPEVK LLPQLYKSNS  540
SNSSDILTSN QKDDAKLFSP GKSGKSTAKF VAKPFSRSVT HAPKGVCFLT DSSRGKNSKL  600
KLDETVLKSG DAVEVVHEAN SEVPSSTDKL NETSNELTSS KPRGVNFLSF TQSSLDGSSF  660
KTFSNRCSDG FEEAGKLVTG DLADRKQTHT SPKNGQFVED CGQTSQNVTD LSWNLNGSAN  720
RTPAPITLHI NPVSRDKNQS DGSSLGESDD NKDGTFSKST EEKRTTPCKL PVNTHLLLPF  780
GGSCDQSASA RYPQSRSSSF KTSLLSNTPS LVQKAVQSTL ALAAKFEFDI KPVHQPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381385KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AJS00.0A0A2Z7AJS0_9LAMI; Zinc finger CCCH domain-containing protein 65
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720