PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21519.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 517aa    MW: 56745.2 Da    PI: 6.9997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21519.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16311357455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L++l+P +      K +Ka++L +A+eY+ksLq
  KZV21519.1 311 VHNLSERRRRDRINEKMRALQQLIPRC-----NKTDKASMLDEAIEYLKSLQ 357
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.8E-21304365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20304365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.324307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-17310361No hitNo description
PfamPF000101.1E-13311357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-18313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
RNMNQYIPGF QEIEDDCSIP RPKRLPTGEE DIMELLWRNG QVVVQRSTKK PAGAGEVEVA  60
AEQLTVKGIR SSAEEHHLFM QEDEMASWLQ YPIDESSFDR DLYSDLIYSA PPPPPPLQAP  120
LPAMYPPPRS MPEIRPHPPP TQPPALPPQN QDFTPRFPNF VHFSRHPCRQ SIEPISKPSV  180
AAAREPTVVD SNETPAVGQE SRASPPDFTT QMNTDRGAAA VDVHGAAAGT CELTVSSSPG  240
RSGSSFSANV KANGQIRKPT PAGERKRKSR EADNNVCRSE ENDYYGVGAE TKRQGRVSAA  300
SSSKRSRAAE VHNLSERRRR DRINEKMRAL QQLIPRCNKT DKASMLDEAI EYLKSLQLQV  360
QMMSSMGCGM VPVMYPGTQR FMPAMGMGMG MDMAMSRPML PYPSMQLPGS GLPDQATPTA  420
HMGPGFQIPA FHLPPMLPLP DSSRIQAVSS LADPVLNAVV SLDPNQPRMP NFVYPYQQFP  480
VLQQASQLPF PPQNQAAAQP VGNSKETGDM GNQQSAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315320ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083103.11e-136transcription factor PIF1
TrEMBLA0A2Z7AQ910.0A0A2Z7AQ91_9LAMI; Phytochrome interacting factor 3-like 5 isoform 1 (Fragment)
STRINGXP_009591396.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-33phytochrome interacting factor 3-like 5