PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21468.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 325aa    MW: 36561.5 Da    PI: 5.624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21468.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv+ +++ G  +W+t +++ g+ R++k+c++rw +yl
       KZV21468.1 15 KGLWSPEEDEKLVNFIRENGISCWSTMPKYAGLERCGKSCRLRWVNYL 62
                     678*******************************************97 PP
2Myb_DNA-binding44.73.1e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E  l ++++k+ G++ W+ Ia+ ++ gRt++++k++w++
       KZV21468.1  68 RGTFTPQEAALVIECHKLVGNR-WSHIAHLLP-GRTDNEIKNFWNS 111
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-23765IPR009057Homeodomain-like
PROSITE profilePS5129414.6861062IPR017930Myb domain
SuperFamilySSF466895.24E-2712109IPR009057Homeodomain-like
SMARTSM007171.4E-111464IPR001005SANT/Myb domain
PfamPF002494.3E-131562IPR001005SANT/Myb domain
CDDcd001671.50E-101862No hitNo description
PROSITE profilePS5129424.53463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2366118IPR009057Homeodomain-like
SMARTSM007172.0E-1467115IPR001005SANT/Myb domain
PfamPF002495.8E-1368111IPR001005SANT/Myb domain
CDDcd001673.63E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSSNHNCCDK QNVRKGLWSP EEDEKLVNFI RENGISCWST MPKYAGLERC GKSCRLRWVN  60
YLRPDLKRGT FTPQEAALVI ECHKLVGNRW SHIAHLLPGR TDNEIKNFWN SSLKKKIVAH  120
LRYVQDRKKA AAAAAAAACF AQSRNLYYVN PDPMILEAAP VALVVPAPVQ IYVPGPVEVQ  180
VSPVSDVPAA AWHAQDYYPE MMPRNYQNVL YEYDDDFISQ FEDPTPFFDE LERKEFGVPV  240
SSAVEEQVFA QPANQGPVIS LDMKVPPHHI DFIESRLAAF MASTPSPISS SKNQYLLMDP  300
SPSGEAFCVD SCIATPSSPW DFSEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30151177108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AJC30.0A0A2Z7AJC3_9LAMI; Uncharacterized protein
STRINGXP_008447615.13e-60(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-62myb domain protein 26