PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21130.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 197aa    MW: 22660.2 Da    PI: 9.3937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21130.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-054062123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C+k F++   L  H+++H
  KZV21130.1 40 YSCSFCKKEFKSAQALGGHMNVH 62
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-43765IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.42E-73767No hitNo description
PROSITE profilePS5015711.3654067IPR007087Zinc finger, C2H2
PfamPF139122.4E-64063IPR007087Zinc finger, C2H2
SMARTSM003550.0034062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDKFKWATCD HQRLRDSWEN TSLSFEKDRA YGFSWPQRNY SCSFCKKEFK SAQALGGHMN  60
VHRRDRARMR LSPNSWDNPN SNPNPNSNPS YSSSSSWLLP PAASKFSPYY SSSPSSASLN  120
KELNFPHGVE HKHEFLNFHG GDLGEKNSNI GGILEFSRRK DCSRVWKAKE FVKLDLNMGL  180
LKDSKEELDL ELRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-113562229superman protein
2l1o_A6e-113562229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080293.11e-67transcriptional regulator SUPERMAN-like
TrEMBLA0A2Z7AJ151e-143A0A2Z7AJ15_9LAMI; Transcriptional regulator SUPERMAN-like
STRINGXP_010274874.12e-35(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-21C2H2 family protein