PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV20759.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 781aa MW: 89618.6 Da PI: 7.8261

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV20759.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	3e-21	64	138	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn YA++vGF++r+ + ++s+ +g i++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHel KZV20759.1 64 EFYNIYASQVGFKIRIGQVYRSRVDGAIISRKFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVLANIKEEHNHEL 138 6*************************************987..............589**************************9 PP
2	FAR1	64.4	3.2e-20	214	287	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfYn++A ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnHe KZV20759.1 214 KFYNTFAVNAGFKVRIGQLFRSKHDGSITSRRFVCSKEGRQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHE 287 6************************************9988..............4899************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-17	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.1E-16	214	287	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-25	390	482	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	665	703	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-8	674	700	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-8	678	705	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MRLIPLRSGS YRVYDIDMNL EVLGDITTVR AKPPPVVNGH RNDGEPKMEP CVGLEFDSAE 60 EAQEFYNIYA SQVGFKIRIG QVYRSRVDGA IISRKFVCSK EGFQTNSRTG CPAFIRVQKV 120 DSGKWVLANI KEEHNHELEI SGELCPPQVK RKSFPTPRSS AGGASRTGIR SYEDDDLSDA 180 DVKRHRNEGM DEYVGSSCEP YKGLEFSSAN EAYKFYNTFA VNAGFKVRIG QLFRSKHDGS 240 ITSRRFVCSK EGRQHPSRVG CGAYMRIQRQ ESGRWVVDRL QKEHNHEYDG LTAPSRLVTV 300 ASKGYREEGS SVLENLDLVE TNGGLSLVKR VLESKIGSDW YSMLLEYFQS RQSEDTGFFY 360 SVEIRDGKAM NIFWADARSR FSCAQFGDAI VFDTRYRRSN YLVPFASFVG VNHHRQPVLL 420 GCALIADESE ESYTWIFKAW VTAMLGCRPV SIIADQDTDI QRAIAQVFPG TRHRFSAWQI 480 LAKEQENLGA LLSMDTNFKY EYESCIFRSQ TASEFDSAWN MIMSKYNLRE NAWLKEMYRM 540 RESWVPLYIK GTFFAGIPVD GSLKLYFGTL LTAETLLKEF VVRYEKALEN CREEERKEDF 600 NSYNLQAVLH TKDPIEEQCR SLYTVTMFKV FQKELLECYS YVGIKINVDG AINRYLVQKC 660 GSGDERNTIA FNASNLNISC SCRMFEFEGV LCRHALKVFQ IMNIKELPSR YILHRWSKNA 720 KHGILRDADS GGGLQDFKPL MLWSLREESR NYIEAGVASL ERYKLAFEIM QEGRRNFCWQ 780 N

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MRLIPLRSGS YRVYDIDMNL EVLGDITTVR AKPPPVVNGH RNDGEPKMEP CVGLEFDSAE  60
EAQEFYNIYA SQVGFKIRIG QVYRSRVDGA IISRKFVCSK EGFQTNSRTG CPAFIRVQKV  120
DSGKWVLANI KEEHNHELEI SGELCPPQVK RKSFPTPRSS AGGASRTGIR SYEDDDLSDA  180
DVKRHRNEGM DEYVGSSCEP YKGLEFSSAN EAYKFYNTFA VNAGFKVRIG QLFRSKHDGS  240
ITSRRFVCSK EGRQHPSRVG CGAYMRIQRQ ESGRWVVDRL QKEHNHEYDG LTAPSRLVTV  300
ASKGYREEGS SVLENLDLVE TNGGLSLVKR VLESKIGSDW YSMLLEYFQS RQSEDTGFFY  360
SVEIRDGKAM NIFWADARSR FSCAQFGDAI VFDTRYRRSN YLVPFASFVG VNHHRQPVLL  420
GCALIADESE ESYTWIFKAW VTAMLGCRPV SIIADQDTDI QRAIAQVFPG TRHRFSAWQI  480
LAKEQENLGA LLSMDTNFKY EYESCIFRSQ TASEFDSAWN MIMSKYNLRE NAWLKEMYRM  540
RESWVPLYIK GTFFAGIPVD GSLKLYFGTL LTAETLLKEF VVRYEKALEN CREEERKEDF  600
NSYNLQAVLH TKDPIEEQCR SLYTVTMFKV FQKELLECYS YVGIKINVDG AINRYLVQKC  660
GSGDERNTIA FNASNLNISC SCRMFEFEGV LCRHALKVFQ IMNIKELPSR YILHRWSKNA  720
KHGILRDADS GGGLQDFKPL MLWSLREESR NYIEAGVASL ERYKLAFEIM QEGRRNFCWQ  780
N

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV20759.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090829.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]