PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20503.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 228aa    MW: 26342.9 Da    PI: 8.9262
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20503.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-32149207159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  KZV20503.1 149 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERFADDPRMVITTYEGRHIHS 207
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-33134207IPR003657WRKY domain
SuperFamilySSF1182901.12E-28141208IPR003657WRKY domain
PROSITE profilePS5081129.516144209IPR003657WRKY domain
SMARTSM007747.6E-36149208IPR003657WRKY domain
PfamPF031063.5E-25150206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLNQSAALFE EQDHVIIASQ LAGFIPNFQT NFNSTSPLEF PINMHQPCKS LAANLMSTPL  60
PSLEAADQPL PTKQKDEFIA HFAGSQFLSL QRSPANYWAW GDLMSDCMSM KVGDHVGVSP  120
LKMKKIYKGR RKVREPRFCF KTMSDIDVLD DGYKWRKYGQ KVVKNTQHPR SYYRCTQDNC  180
RVKKRVERFA DDPRMVITTY EGRHIHSPSH DNDDESRSSI YQLNHFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26140206874Probable WRKY transcription factor 4
2lex_A1e-26140206874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100913.22e-96probable WRKY transcription factor 13
TrEMBLA0A2Z7AFL31e-173A0A2Z7AFL3_9LAMI; WRKY DNA-binding protein 13
STRINGEOX923229e-84(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-58WRKY DNA-binding protein 13