PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20235.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 319aa    MW: 35583.5 Da    PI: 9.5132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20235.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-1793140148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +grWT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
       KZV20235.1  93 KGRWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 140
                      79******************************99************97 PP

2Myb_DNA-binding56.94.7e-18146190147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Edel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
       KZV20235.1 146 RGNFTEDEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 190
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.64788140IPR017930Myb domain
SuperFamilySSF466894.49E-2992187IPR009057Homeodomain-like
SMARTSM007173.2E-1392142IPR001005SANT/Myb domain
PfamPF002495.3E-1593140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2394147IPR009057Homeodomain-like
CDDcd001671.72E-1095140No hitNo description
PROSITE profilePS5129427.893141195IPR017930Myb domain
SMARTSM007174.2E-17145193IPR001005SANT/Myb domain
PfamPF002492.6E-16146190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-27148196IPR009057Homeodomain-like
CDDcd001672.40E-12148191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEQPATARMF SISLRHSDYR QFQILTGHRR VLLPLDAVGL AVDLRLSGDD EVGVRDLQVL  60
IRDIANQIPG TLAPMALQIN CSLLAVRKLT QTKGRWTKEE DDRLIAYIRA HGEGCWRSLP  120
KAAGLLRCGK SCRLRWINYL RPDLKRGNFT EDEDELIIKL HSLLGNKWSV IAGRLPGRTD  180
NEIKNYWNTH IRRKLISRGI DPTTHRSINE PAASPAQEIK TISFNSVTKD YNVKENKSTT  240
STSTTAAAAA CGLSSKAEEI IHVQEPGPDL NLELRISLPY QQDPFKTGGS GSSSSSDSGR  300
YDFLGLKTGV LDYRGLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28921956108B-MYB
1h8a_C6e-289219526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022864720.11e-104myb-related protein 308-like
SwissprotP813931e-92MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2Z7AEQ20.0A0A2Z7AEQ2_9LAMI; MYB domain class transcription factor
STRINGPOPTR_0004s18020.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-90myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]