PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV20235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35583.5 Da PI: 9.5132 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.7e-17 | 93 | 140 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl KZV20235.1 93 KGRWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 140 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.7e-18 | 146 | 190 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ KZV20235.1 146 RGNFTEDEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 190 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.647 | 88 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 92 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 92 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 93 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 94 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-10 | 95 | 140 | No hit | No description |
PROSITE profile | PS51294 | 27.893 | 141 | 195 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-17 | 145 | 193 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 146 | 190 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 148 | 196 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-12 | 148 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEQPATARMF SISLRHSDYR QFQILTGHRR VLLPLDAVGL AVDLRLSGDD EVGVRDLQVL 60 IRDIANQIPG TLAPMALQIN CSLLAVRKLT QTKGRWTKEE DDRLIAYIRA HGEGCWRSLP 120 KAAGLLRCGK SCRLRWINYL RPDLKRGNFT EDEDELIIKL HSLLGNKWSV IAGRLPGRTD 180 NEIKNYWNTH IRRKLISRGI DPTTHRSINE PAASPAQEIK TISFNSVTKD YNVKENKSTT 240 STSTTAAAAA CGLSSKAEEI IHVQEPGPDL NLELRISLPY QQDPFKTGGS GSSSSSDSGR 300 YDFLGLKTGV LDYRGLEMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 92 | 195 | 6 | 108 | B-MYB |
1h8a_C | 6e-28 | 92 | 195 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV20235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022864720.1 | 1e-104 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-92 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2Z7AEQ2 | 0.0 | A0A2Z7AEQ2_9LAMI; MYB domain class transcription factor | ||||
STRING | POPTR_0004s18020.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 3e-90 | myb domain protein 7 |
Publications ? help Back to Top | |||
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