PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20163.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 921aa    MW: 103259 Da    PI: 6.8523
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20163.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.7e-097167531954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  KZV20163.1 716 FEHflHPYPKDSEKSILARQTGLTRSQVANWFINARVR 753
                 554459******************************88 PP
2BELL101.75.5e-33580651172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 er++lq+k +kL+s+leeVdkrYkqy +q+q+++ssF++vag g  k Y +lA+++iS +Fr+L+dai++qi
  KZV20163.1 580 ERHNLQNKMTKLVSMLEEVDKRYKQYLHQMQALVSSFDMVAGRGVTKQYSALAQRTISSQFRSLRDAIKKQI 651
                 799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF537905.23E-746224IPR000878Tetrapyrrole methylase
HamapMF_0187735.0697226IPR008189rRNA small subunit methyltransferase I
CDDcd116481.74E-1218226No hitNo description
PfamPF005908.5E-288207IPR000878Tetrapyrrole methylase
Gene3DG3DSA:3.40.1010.109.0E-158114IPR014777Tetrapyrrole methylase, subdomain 1
TIGRFAMsTIGR000968.8E-708253IPR008189rRNA small subunit methyltransferase I
PROSITE patternPS0129608596IPR018063SAM-dependent methyltransferase RsmI, conserved site
Gene3DG3DSA:3.30.950.108.3E-39115227IPR014776Tetrapyrrole methylase, subdomain 2
SMARTSM005743.7E-40504649IPR006563POX domain
PfamPF075265.3E-41512647IPR006563POX domain
PROSITE profilePS5007112.276694757IPR001356Homeobox domain
SMARTSM003893.7E-9697761IPR001356Homeobox domain
CDDcd000863.32E-11697758No hitNo description
SuperFamilySSF466892.14E-16698762IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-27700761IPR009057Homeodomain-like
PfamPF059201.7E-16714753IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
KGPLKPGLYL VGTPIGNLED ITLRALRVLK FANVILSEDT RHSGKLLHHY NIKTPLLSYH  60
KFNESQREQV VLRRLQDGEI VALISDAGTP GISDPGMELA KLCVDKDIPV IPVPGPSAVI  120
AALSASGLPT NEFTFVGFLS KHTGTRRDRM LVSANSAATQ VFFVPPHKLC QFLEESSLIF  180
GLSRQCVIAR EITKLHEEFW RGTLEEAKEA FSAHQPKGEI TLMIEGTTNR ETRVLTEAQL  240
ENELGELISK GHSLSELGWF AIHSVFINWH RKLLNPRWKN MALFYSNASN EEDILATTYS  300
PSQKLISYPS SGTPNNKAYA SQPSVSESYL NMLSSSTILA HDHGDKNYIR STGERAIIPP  360
KGFPTDVQQL DTQLNFMCRF SDCDTVAVNP HAFTKELEHS NGPKQKSLSH GLCLSLGSQE  420
HSPDQMTSHM NQYANSSLCS LLSSHVLQSE DHVSQRINLK NVEYLSFDLS GGNQDVVKYE  480
VMNNFQNLIS SKDAISFPFL HQTSEFSGTS CNSKYLKAAQ DLLEEVVNVH RAFETSGKGK  540
NKNLLGPDGL KETGATGGET SAEFRESTTN APHLSLSPSE RHNLQNKMTK LVSMLEEVDK  600
RYKQYLHQMQ ALVSSFDMVA GRGVTKQYSA LAQRTISSQF RSLRDAIKKQ IQHTQNNLEE  660
QDADSHGQGV LSRLRYVDQK LRQQKIVQQC GIMRQPWRPQ RGLPETAVSV LRAWLFEHFL  720
HPYPKDSEKS ILARQTGLTR SQVANWFINA RVRLWKPMIE DIYKEEFGDA ETEPKSSPEH  780
ASVTQEVKGA EAGLQESLIS AHSIQSRHSV FSSAELSYDA GVLQENEINY GLTRLHKQHV  840
DEDSTHKDMI LDGSIGSQVS LALDYTRNYR DSQPVLVENK LKGDYAEYSS MGLDKSEFYD  900
ENTINHQPRF VNPKQLSDFV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hw4_A2e-5282384236Ribosomal RNA small subunit methyltransferase I
5hw4_B2e-5282384236Ribosomal RNA small subunit methyltransferase I
5hw4_C2e-5282384236Ribosomal RNA small subunit methyltransferase I
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083613.10.0BEL1-like homeodomain protein 7
RefseqXP_011083614.10.0BEL1-like homeodomain protein 7
RefseqXP_011083616.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2Z7AEK50.0A0A2Z7AEK5_9LAMI; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.24e-92BEL1-like homeodomain 6