PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV20139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 401aa MW: 43306.9 Da PI: 9.6928 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 166 | 188 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ H KZV20139.1 166 ACSECGEVFPKIESLEHHQAIrH 188 6******************9877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.141 | 165 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 165 | 188 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.92E-20 | 190 | 397 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.6E-9 | 191 | 397 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence Send to blast |
MALLTSIPDP ESRKKQQPKN AKPKKKHQIL VNHPPSSSWD QIKNLLACKQ IQDSKIHDPS 60 RHNGNATANH IYSYCNSTCT FRDVVHGNTR VAHRSDHSPE GSSVGQEIRS MSKRSTGHGL 120 VRSSGGGGAS AASSGRGMQL RKLSGCYECH SVDPSRYPFA RTTICACSEC GEVFPKIESL 180 EHHQAIRHAV SELGPDDSSR NIVEIIFKSS WLKKNNPICK IERILKVHNT KRTIQRFEDY 240 RDTVKTRATN SSKKNARCAA DGNELLRFHC AAITCSLGAR GSSSLCSSIP GCGVCTIIRH 300 GFEGNKVGGI RTTAGSGRAH DSLGGPGTRR AMLVCRVIAG RVKRVAEDAA VDEDGAASVA 360 AGSYDSVGGS GGIYSNLEEL HVFNPRAILS CFVVIYKALN S |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV20139.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074673.1 | 0.0 | uncharacterized protein LOC105159339 isoform X2 | ||||
TrEMBL | A0A2Z7ALR9 | 0.0 | A0A2Z7ALR9_9LAMI; Nucleic acid binding protein | ||||
STRING | XP_006473648.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5195 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-149 | C2H2-like zinc finger protein |