PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20016.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family FAR1
Protein Properties Length: 330aa    MW: 38378.8 Da    PI: 9.8496
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20016.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.24e-1635119182
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                 +fYn+YA+e+GFs r+s+skk k ++e+++++f C keg+++e +++    +ek++rtr   rtgCk +++  ++ ++++ v++++
  KZV20016.1  35 SFYNQYAREAGFSARISNSKKDKGTNEVVWKKFICFKEGRTSEWNNQakvgQEKQERTRGGVRTGCKSRINKPLQ-ESRYDVINFQ 119
                 5****************************************9998888999999999*************98888.8899988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1335119IPR004330FAR1 DNA binding domain
SMARTSM005750.0045137164IPR006564Zinc finger, PMZ-type
PfamPF044347.5E-4140156IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEENIIDDQI YIPQVVDDRK PKVGMEFTSI EDAFSFYNQY AREAGFSARI SNSKKDKGTN  60
EVVWKKFICF KEGRTSEWNN QAKVGQEKQE RTRGGVRTGC KSRINKPLQE SRYDVINFQC  120
SSSKPRFLMH DKLKDYISFS CTKFDFEGIP CRHMLAFFRI NQVFQLPDKY ILKRWTQDAK  180
VGVTFVMCEE NVNNDRERFL MSRHSRLSFK ASVLVDEASL TDEGTKFLDE QFDHIYTKIK  240
YINSSRTFDG RNLRKRTMDG ARGVIDPAEI RTKGRGKRMK SSKEKSTLKS RQCRGCGLRG  300
VSHDKCNCPK LQDGSVSLNL CMFYSFFPNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20016.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AEB90.0A0A2Z7AEB9_9LAMI; Protein FAR-RED IMPAIRED RESPONSE 1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1-related sequence 5