PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20006.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 332aa    MW: 37063.2 Da    PI: 6.0673
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20006.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-171470148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++v  +G g+W++++r  g         + R++k+c++rw +yl
       KZV20006.1 14 RGLWSPEEDEKLIKYVSNYGHGCWSSVPRLAGvdilpsllwLQRCGKSCRLRWINYL 70
                     788****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-25673IPR009057Homeodomain-like
PROSITE profilePS5129422.841974IPR017930Myb domain
SMARTSM007174.7E-121372IPR001005SANT/Myb domain
PfamPF002494.7E-151470IPR001005SANT/Myb domain
SuperFamilySSF466895.85E-191697IPR009057Homeodomain-like
CDDcd001671.00E-101770No hitNo description
Gene3DG3DSA:1.10.10.603.7E-77497IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVHHSCCNKQ KVKRGLWSPE EDEKLIKYVS NYGHGCWSSV PRLAGVDILP SLLWLQRCGK  60
SCRLRWINYL RPDLKRGSFT PQEAALIVEL HKILGNSIKK KLIAHQNDYL SDHLTATLIS  120
PNLTNSISSS TSSSSHYSSD QNNLFSPNLN YDLIPCPQID RICITNPPLA LQDLDPVEIR  180
LLDNHLMNYN ASNFVAPVPP PSTIHFSPCA IGAQLSIPLS YHPQFVCDDH HQQSLQKLED  240
DFIFGTESLS TQVSNPKLDQ GFDQDPSSVV IPILPKLNDL LKWNELGMPF SSSSPEQVLD  300
PILSGFSCEN GTMEGFEPFM QIFAAAAPMQ LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-15141187104B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072535.11e-66transcription factor MYB39
TrEMBLA0A2Z7AEA90.0A0A2Z7AEA9_9LAMI; Myb-related protein 305
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.17e-52myb domain protein 26