PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV19540.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 546aa MW: 59892.6 Da PI: 4.504

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV19540.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	450.1	1.4e-137	182	544	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 lv+ L++cAeav++++l+la+al++++ la +++ +m+++a+yf+eALa+r+++ l ps+ +++ ++ + f+e++P+lkf+h+taN KZV19540.1 182 LVHSLMACAEAVEQENLKLAEALVKNIGFLAISQAGAMRKVATYFAEALARRIYK--------LYPSNPQDSAFTDL--LQMHFYETCPYLKFAHFTAN 270 689*************************************************9........44444443334444..4446************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaIlea++ge+rvH+iDf+++qG+QWpaLlqaLa Rp+gpp++R+Tgvg+p +++++ l+e+g+rLa++Ae+++v+fe++ +va++l+dl+ +++++++ KZV19540.1 271 QAILEAFAGEDRVHVIDFSMKQGMQWPALLQALALRPGGPPTFRLTGVGPPPQDNTDHLQEVGWRLAQLAETINVEFEYKGFVASSLADLDSSMFDIRQ 369 *********************************************************************************************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.lpr.eseerikvErellgreiv 295 gEa+aVn++++lh+ll++++++e+ vL++v+ + Pk+++vveqea+hn++ Fl+rf eal+yys+lfdsle+ + s++++ +++++lg +i+ KZV19540.1 370 GEAVAVNSIFELHQLLARPGAIEK----VLQVVRVMDPKIFTVVEQEANHNGPVFLDRFNEALNYYSTLFDSLESCgVDGvVSDQDKLMSEMYLGGQIC 464 ********************....*****************************************665143314599********** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 nvvaceg++r+erhetl+kW++rl+++GF+pv+l+++a+kqa +l++ ++ +dgyrvee++g+l+lgW++rpL+++SaWr KZV19540.1 465 NVVACEGSDRVERHETLAKWKNRLGSSGFEPVSLGSNAYKQAGMLVALFGgGDGYRVEESNGCLMLGWHTRPLIATSAWR 544 *****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	1.4E-27	17	92	No hit	No description
Pfam	PF12041	1.5E-30	17	86	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	66.213	156	523	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-135	182	544	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MLCSDSGKQK QSDSGFDELF AVLGYNVKSS DMASVAQKIE QLEEVMGSVE QEDGNVSHFA 60 SETIHYNPSD LSSWLESMIS GLNPLPELDL SPSAVILDPF LQPNQTAQAQ SDFGSELIAI 120 PGPAAYHYPR IQATPPPPAP GPSTPDRKLK SVPYSDAGEW NFPDESTRQV VLVDSQENGI 180 RLVHSLMACA EAVEQENLKL AEALVKNIGF LAISQAGAMR KVATYFAEAL ARRIYKLYPS 240 NPQDSAFTDL LQMHFYETCP YLKFAHFTAN QAILEAFAGE DRVHVIDFSM KQGMQWPALL 300 QALALRPGGP PTFRLTGVGP PPQDNTDHLQ EVGWRLAQLA ETINVEFEYK GFVASSLADL 360 DSSMFDIRQG EAVAVNSIFE LHQLLARPGA IEKVLQVVRV MDPKIFTVVE QEANHNGPVF 420 LDRFNEALNY YSTLFDSLES CGVDGVVSDQ DKLMSEMYLG GQICNVVACE GSDRVERHET 480 LAKWKNRLGS SGFEPVSLGS NAYKQAGMLV ALFGGGDGYR VEESNGCLML GWHTRPLIAT 540 SAWRPG

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MLCSDSGKQK QSDSGFDELF AVLGYNVKSS DMASVAQKIE QLEEVMGSVE QEDGNVSHFA  60
SETIHYNPSD LSSWLESMIS GLNPLPELDL SPSAVILDPF LQPNQTAQAQ SDFGSELIAI  120
PGPAAYHYPR IQATPPPPAP GPSTPDRKLK SVPYSDAGEW NFPDESTRQV VLVDSQENGI  180
RLVHSLMACA EAVEQENLKL AEALVKNIGF LAISQAGAMR KVATYFAEAL ARRIYKLYPS  240
NPQDSAFTDL LQMHFYETCP YLKFAHFTAN QAILEAFAGE DRVHVIDFSM KQGMQWPALL  300
QALALRPGGP PTFRLTGVGP PPQDNTDHLQ EVGWRLAQLA ETINVEFEYK GFVASSLADL  360
DSSMFDIRQG EAVAVNSIFE LHQLLARPGA IEKVLQVVRV MDPKIFTVVE QEANHNGPVF  420
LDRFNEALNY YSTLFDSLES CGVDGVVSDQ DKLMSEMYLG GQICNVVACE GSDRVERHET  480
LAKWKNRLGS SGFEPVSLGS NAYKQAGMLV ALFGGGDGYR VEESNGCLML GWHTRPLIAT  540
SAWRPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-69	177	545	13	379	Protein SCARECROW
5b3h_D	3e-69	177	545	13	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV19540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070609.1	0.0	DELLA protein GAI1
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	A0A2Z7ADU2	0.0	A0A2Z7ADU2_9LAMI; Uncharacterized protein
STRING	Migut.E00445.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	0.0	GRAS family protein