PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV19123.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 366aa    MW: 40472.1 Da    PI: 8.1545
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV19123.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.2e-19242274133
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                 C+nCgt+kTplWR gp g+k+LCnaCG++ rkk
  KZV19123.1 242 CVNCGTSKTPLWRGGPAGPKSLCNACGIRSRKK 274
                 *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-14236288IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-12238276No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15241274IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.68E-12241276No hitNo description
PfamPF003201.1E-16242275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.703242272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAESSRGGGG KGKSVVPPTR NVSPLNIQDL DFLFDDDDEN TLQDVVVQPT FQQNKTNDDE  60
DTDDEKNDDE DTDCTSGTTT GGGTSEYSWW DTPDALYYHL GTRGPSSTLQ ARPTLLRSGS  120
FPKTRSEIGC LHEGRYVFPN LNDKIPEDRR EYLIRDTRCR RIFARICSSP PPSPSINTRV  180
FRCRRPHFSV VNRVFHQGFR QIFDLEPEMV DLRDKGSESE EMSSQTPIPD RLSSDCSNIK  240
TCVNCGTSKT PLWRGGPAGP KSLCNACGIR SRKKIRALMG VTKEEKKAKK SANARSVSHQ  300
TSSSNSCTGS SGGESTGGKI GKKLWAFGLD VAWQRPRSNT NQRRKLGEEE QAAILLMALS  360
CGSVYA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV19123.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7ABZ90.0A0A2Z7ABZ9_9LAMI; GATA transcription factor 15-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-27GATA transcription factor 15