PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV19009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 206aa MW: 24046.2 Da PI: 6.1534 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.2 | 4.3e-21 | 57 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +t++++eq+++Le++F +++++ e++ +LA++lgL+ rqV vWFqNrRak+k KZV19009.1 57 KTKLNEEQVNILEKHFGSEHKLESERKDRLAAELGLQPRQVAVWFQNRRAKWK 109 7999************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.1 | 7.4e-36 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k +l++eqv++LE++F +e+kLe+erK +la eLglqprqvavWFqnrRA++k+++lE++y++Lk+++d+ + e++ Le++ +L+e+lk+ KZV19009.1 56 RKTKLNEEQVNILEKHFGSEHKLESERKDRLAAELGLQPRQVAVWFQNRRAKWKSQRLEEEYSKLKSQHDTAVVEKCCLETQLLKLQEQLKD 147 799**************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 8.5E-19 | 53 | 115 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.07 | 56 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.03E-16 | 56 | 112 | No hit | No description |
Pfam | PF00046 | 1.9E-18 | 57 | 109 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-18 | 57 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 57 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.5E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDPLEYDPQM LLDISQFYTS ETCNQILPEK EKQKARGRRK KISKNIDGEN VGVMLRKTKL 60 NEEQVNILEK HFGSEHKLES ERKDRLAAEL GLQPRQVAVW FQNRRAKWKS QRLEEEYSKL 120 KSQHDTAVVE KCCLETQLLK LQEQLKDAEK EIQRLSSNSP TSSFSMEAMD PSNYLGEFGA 180 QGLESVFHLP TNDFVPSLQW DNFYYV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 40 | KEKQKARGRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV19009.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099589.2 | 1e-69 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 2e-52 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2Z7AIT4 | 1e-151 | A0A2Z7AIT4_9LAMI; Homeobox-leucine zipper protein ATHB-40 | ||||
STRING | Solyc02g085630.2.1 | 4e-64 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 7e-45 | homeobox protein 40 |
Publications ? help Back to Top | |||
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