PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18910.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 297aa    MW: 33109.8 Da    PI: 8.776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18910.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00062248270123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C+++F +   L  H r+H
  KZV18910.1 248 HECPFCDRVFASGQALGGHKRSH 270
                 79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-5528IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203628IPR007087Zinc finger, C2H2
SMARTSM003550.71628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PfamPF139121.7E-11199224IPR007087Zinc finger, C2H2
SuperFamilySSF576675.57E-8199270No hitNo description
PROSITE profilePS501579.494200227IPR007087Zinc finger, C2H2
SMARTSM003550.22200222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
PfamPF139124.3E-11247270IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494248270IPR007087Zinc finger, C2H2
SMARTSM003550.023248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MERNTHRCRL CFRNFSNGKA LGGHMRSHVM NLYTAKKGSK RESYEDPSEN LEDSRSCLSI  60
SSRSSSENEE ERRQSFEKGS VDPAEFISSV AVQDWESETD SAGRRSKRAR YGRASGSNLK  120
STRCLHIKNS TADSETETLS SISDTTSEDE DVAYCLMMLS RDKWKREEKE KGLEDDYREE  180
YSDVVRVKKG GGSTKVRGRY RCKTCNELFR SYQALGGHRA SHKKVKVNPV PPSRTAPRGG  240
PAAVEKVHEC PFCDRVFASG QALGGHKRSH FVGAVSRIGG TLSIDLNLPA PVDDEGI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022862920.14e-79zinc finger protein ZAT4-like
TrEMBLA0A2Z7AB210.0A0A2Z7AB21_9LAMI; Uncharacterized protein
STRINGcassava4.1_031439m8e-66(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-47C2H2-like zinc finger protein