PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV18846.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

SRS

Protein Properties

Length: 345aa MW: 37383.3 Da PI: 7.9797

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV18846.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218	2e-67	117	275	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.......kskkqsalsstklssa 94 +++CqdCGnqakkdC+h RCRtCCksrgf C+thvkstWvpaakrrerqqq +a+++++++ + +++kr re+ + s++ ++++ KZV18846.1 117 EGINCQDCGNQAKKDCTHLRCRTCCKSRGFPCQTHVKSTWVPAAKRRERQQQITAMQQEHQQLTvGGENTKRLRENsgggagsSGGIGSSVLASTTRLP 215 6789*******************************************99998877766554447888888888867766544444555556666666 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ ++ ++P+ev+s+avfrcvrvs++dd+ee++aYqtavsigGhvfkGiLydqGle+ KZV18846.1 216 VIPSGFDRGQFPQEVNSPAVFRCVRVSAMDDAEEHFAYQTAVSIGGHVFKGILYDQGLES 275 6788899999*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.9E-65	118	274	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-26	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.6E-26	225	273	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSGFFSLGGK GQEQQDQEQT DTNSSSSFLF KNEEIYNKGF ELWQQYHQLY QQRLQHHPNQ 60 LHNFQDVGFS VGPSSSNTGR NNNNIIFGSN IGDDSTSYSH RSAAGFRMAR QGRGANEGIN 120 CQDCGNQAKK DCTHLRCRTC CKSRGFPCQT HVKSTWVPAA KRRERQQQIT AMQQEHQQLT 180 VGGENTKRLR ENSGGGAGSS GGIGSSVLAS TTRLPVIPSG FDRGQFPQEV NSPAVFRCVR 240 VSAMDDAEEH FAYQTAVSIG GHVFKGILYD QGLESRYPGG GGESSTGCGV PQQPLDFIAA 300 AAATTSAAAT ATTSHLNLTM LDPSIYPAPL SAFMAGTQFF PPPRP

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSGFFSLGGK GQEQQDQEQT DTNSSSSFLF KNEEIYNKGF ELWQQYHQLY QQRLQHHPNQ  60
LHNFQDVGFS VGPSSSNTGR NNNNIIFGSN IGDDSTSYSH RSAAGFRMAR QGRGANEGIN  120
CQDCGNQAKK DCTHLRCRTC CKSRGFPCQT HVKSTWVPAA KRRERQQQIT AMQQEHQQLT  180
VGGENTKRLR ENSGGGAGSS GGIGSSVLAS TTRLPVIPSG FDRGQFPQEV NSPAVFRCVR  240
VSAMDDAEEH FAYQTAVSIG GHVFKGILYD QGLESRYPGG GGESSTGCGV PQQPLDFIAA  300
AAATTSAAAT ATTSHLNLTM LDPSIYPAPL SAFMAGTQFF PPPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV18846.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083639.1	1e-143	protein SHI RELATED SEQUENCE 5-like
TrEMBL	A0A2Z7AIB3	0.0	A0A2Z7AIB3_9LAMI; SHI-related sequence 7
STRING	EOY14902	1e-105	(Theobroma cacao)
STRING	Migut.N03122.1.p	1e-104	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-65	Lateral root primordium (LRP) protein-related