PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18726.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 350aa    MW: 38292.6 Da    PI: 5.1631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18726.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-164186147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
       KZV18726.1 41 KGPWSQDEDAMLSQLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 86
                     79******************************.***********985 PP
2Myb_DNA-binding59.57.3e-1993137147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
       KZV18726.1  93 RKPFTDEEDHIILQAHTIHGNK-WASIARLLP-GRTDNAIKNHWNST 137
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5173687IPR017930Myb domain
SuperFamilySSF466893.38E-3038134IPR009057Homeodomain-like
SMARTSM007174.7E-144089IPR001005SANT/Myb domain
PfamPF002496.8E-164186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-254294IPR009057Homeodomain-like
CDDcd001671.67E-134385No hitNo description
PROSITE profilePS5129427.08288142IPR017930Myb domain
SMARTSM007179.4E-1692140IPR001005SANT/Myb domain
PfamPF002491.4E-1593137IPR001005SANT/Myb domain
CDDcd001676.77E-1295138No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2495141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MENDEQEGGQ VAVAIADGEE DDSTALDGGG RVGKRSLDRV KGPWSQDEDA MLSQLVSNFG  60
ARNWSLIARG IPGRSGKSCR LRWCNQLDPA VKRKPFTDEE DHIILQAHTI HGNKWASIAR  120
LLPGRTDNAI KNHWNSTLKR RCMDLVKPKL ESSNKTEDTS LERSKASSSE ETPSCEETNF  180
PKSNEAKDVI PPEQIDASSH GLEKDQPESA AQLLVKSFIP PTLFRPVPRI SAFSVYNLFE  240
SLENSGHLNQ TLRQEISIFN LSESAYGDHL IPHQCGHGCC ESPSGAVSKV SSLLGMEFID  300
YEESPCFTRH ELASLAADIS NVAWRKSGLD SSGVKPMDNA ANGLTCSGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-41381414107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094946.11e-153transcription factor MYB1
TrEMBLA0A2Z7AHZ50.0A0A2Z7AHZ5_9LAMI; Myb-related protein 315
STRINGMigut.J00247.1.p1e-136(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.18e-90myb domain protein 1