PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18674.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YC
Protein Properties Length: 299aa    MW: 34007.1 Da    PI: 6.682
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18674.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC119.21.8e-3793193399
       NF-YC   3 ksfwekqiekatdf...k.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                 ++fw++++e+  +    + +++lPla ik+i+k++e+vkm+sae+Pvl++kacelfi+elt+r+wlha++++rrt+++ d+ +av   d   fl+divp
  KZV18674.1  93 EKFWIERREEIFNApdaRrQNSLPLACIKRIMKSNEQVKMVSAETPVLFAKACELFIMELTMRAWLHARDKNRRTIQRVDVVEAVRDEDLLSFLTDIVP 191
                 689*999776654322144899****************************************************************************9 PP

       NF-YC  98 rd 99 
                 ++
  KZV18674.1 192 TQ 193
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.86E-25106194IPR009072Histone-fold
PfamPF008082.1E-16114177IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-29115191IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MHFFDRERHG GGTSNEASTV LMLFHQEFFG SGQPLAKKVI IIMDMKVNFS SVSKSPSQMY  60
EFIPAPLLSS LSNNQEGDGT DSHFKILVAQ NVEKFWIERR EEIFNAPDAR RQNSLPLACI  120
KRIMKSNEQV KMVSAETPVL FAKACELFIM ELTMRAWLHA RDKNRRTIQR VDVVEAVRDE  180
DLLSFLTDIV PTQMQLEEPL APVNHPGENT SLPVPYVLLT VPDVLPTYNR IFPMNMQGMD  240
PSGIAQAGHS VATDPRLAYQ MNVHDMNHAF MRNHEMQRGF IFPLPPPSSD EAKTYRGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-2711319140118HapE
4g92_C1e-2711319140118HapE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AHC90.0A0A2Z7AHC9_9LAMI; Nuclear factor Y isoform 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1762144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-32nuclear factor Y, subunit C4