PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17814.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 319aa    MW: 36586.8 Da    PI: 4.9084
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17814.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092622962155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yp+++++  LA+++gL+++q+ +WF N+R ++
  KZV17814.1 262 KWPYPTEADKISLAESTGLDQKQINNWFINQRKRH 296
                 569*****************************885 PP
2ELK33.31.1e-11216237122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++Ll+ Y+++++sLk+EFs
  KZV17814.1 216 ELKDRLLQRYGSHISSLKKEFS 237
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.3E-2290134IPR005540KNOX1
PfamPF037905.9E-2191132IPR005540KNOX1
SMARTSM012564.1E-21140191IPR005541KNOX2
PfamPF037912.8E-21144189IPR005541KNOX2
PfamPF037893.0E-9216237IPR005539ELK domain
SMARTSM011882.0E-6216237IPR005539ELK domain
PROSITE profilePS5121310.598216236IPR005539ELK domain
PROSITE profilePS5007112.892236299IPR001356Homeobox domain
SuperFamilySSF466897.27E-19237307IPR009057Homeodomain-like
SMARTSM003894.6E-14238303IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-28241300IPR009057Homeodomain-like
CDDcd000866.84E-13248300No hitNo description
PfamPF059201.9E-17256295IPR008422Homeobox KN domain
PROSITE patternPS000270274297IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDEIYGIHST NTDHDYADKA LMSPENLVIP AEYHQYYYPS FVYSADQRHR IPVFGSEGFG  60
FQSSVPSESA SIDVHNQREG DDENEQADSR ALKAKIASHP SYPKLLDAYI DCQKVGAPPE  120
IACFLDEIRR EKDLYRQDTV ATCTGIDPEL DEFMQTYCDI LMKYKSDLSK PFEEATSFLN  180
NVETQLCNLS IDEGGVSSEE DISGGETEIT KGEDRELKDR LLQRYGSHIS SLKKEFSKKK  240
KKGKLPKEAR QMLLEWWNVH SKWPYPTEAD KISLAESTGL DQKQINNWFI NQRKRHWKPS  300
ENMQLAIMEN LSGRFFAGN
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17814.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071110.11e-164homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS61e-122KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2G9GWW11e-148A0A2G9GWW1_9LAMI; Transcription factor MEIS1
STRINGVIT_01s0127g00210.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-118KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]