PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17794.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARR-B
Protein Properties Length: 509aa    MW: 56923.5 Da    PI: 5.7358
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17794.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.56.9e-24190243155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++Wt +LH++Fv av+q+ G  k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  KZV17794.1 190 KARVVWTVDLHQKFVTAVNQI-GFTKVGPKKILDLMGVPWLTRENVASHLQKYRL 243
                 68*******************.99******************************8 PP
2Response_reg82.71.2e-27201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev ++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    KZV17794.1  20 VLVVDDDPTWLKILEKMLKKCSY-EVMTCNLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 114
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    KZV17794.1 115 DYLLKPIRMKELRN 128
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.32E-3617142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-4517151No hitNo description
SMARTSM004485.4E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.98519134IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-2520129IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.03E-3121134No hitNo description
SuperFamilySSF466896.81E-17188247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27188248IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-21190243IPR006447Myb domain, plants
PfamPF002491.8E-7192242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDSNGFSSPK PDGFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVMTCNLA REALDLLRER  60
KDGFDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVLRKRMHE VRDLEGHESV TEQSDDGYFF GGDLISGKKR KDFDNKQDER  180
AVGDPLSAKK ARVVWTVDLH QKFVTAVNQI GFTKVGPKKI LDLMGVPWLT RENVASHLQK  240
YRLYLSRLQK ENELKIALAG AKNSATTSKD PAENVCLENS NTQIHTNLMP NIDVNGKGIL  300
SMPMGDCKNS LFGDAKEASK GTPSRNSCDS DVKPEHKIHL VQYSSLQFKQ EHNLQFQPEK  360
GFDHMMSPIQ VDSLESIFNR NGTLTQDCKS ESRGQGTGKV TEVESIGALF SAQPERSITC  420
STSNITSHNS GQIPSDNTEC HQRNLILETG SAFRLWDEVL NGNVESFGLG DEELIYGISP  480
HLYGSLDVEF EYGSDTLEHP VIGRGLYIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-17187248263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.10.0two-component response regulator ORR26
SwissprotQ5N6V81e-130ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A4D9APR91e-173A0A4D9APR9_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0010g02230.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]