PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV17717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 516aa MW: 55643.1 Da PI: 5.8609 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 7.9e-31 | 257 | 315 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ KZV17717.1 257 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 315 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-34 | 241 | 317 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-28 | 249 | 317 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 251 | 317 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 256 | 316 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-27 | 258 | 315 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 516 aa Download sequence Send to blast |
MDQSPPPPTT IQFPVNLNCA TAADHADCRK DKRKIIDEMD FFSDKKVCAA ADDRHVQEDN 60 TRILDFNVNT GLHLLTAGNT GSDESIVDDG ISSSSEDKKA KTSELTVLQA ELERMNSENR 120 RLKDMLNQVT NNYNDLQMHM MTLLQQKPND HNGGASEELK NGNGNGNGLM VPRQFMDLGL 180 AVSNDTYEAS LSSSEGRIGR DPPPHNDKEI GGGEDQSVDN KIPRLTPSPK SVDQATEATM 240 RKARVSVRAR SEAPMITDGC QWRKYGQKMA KGNPCPRAYY RCTMAAGCPV RKQVQRCAED 300 RSILITTYEG NHNHPLPPAA MAMASTTSSA ARMLLSGSMP SADGLINPNF LARTLLPCSS 360 NMATISASAP FPTVTLDLTQ SPNPFPRMPP NQFSIPFPNP PQNIVGNGNP AAALLPQILG 420 QALYNQSKFS GLQMSQDLEG AQISSSLQGI QHQGQQTQLT DSVNAITNDP NFTAALAAAI 480 SSIIGGPYQE NGSNINPDSN GNGNNKISSS SNFPVN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 243 | 319 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV17717.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020555004.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-142 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1J6I7B3 | 0.0 | A0A1J6I7B3_NICAT; Wrky transcription factor 6 | ||||
TrEMBL | M1B7H2 | 0.0 | M1B7H2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400038852 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-126 | WRKY family protein |