PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17714.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 422aa    MW: 46476.2 Da    PI: 4.7711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17714.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-102556132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT  Ed +lv++vk++G g+W+++ r  g
       KZV17714.1 25 KGPWTVSEDTILVEYVKKHGEGNWNAVQRNSG 56
                     79*************************99765 PP
2Myb_DNA-binding47.83.3e-155698246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g+++++E+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++
       KZV17714.1 56 GAFSADEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 98
                     79*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-102154IPR009057Homeodomain-like
SuperFamilySSF466892.66E-202396IPR009057Homeodomain-like
SMARTSM0071722456IPR001005SANT/Myb domain
PfamPF002498.6E-82552IPR001005SANT/Myb domain
CDDcd001672.81E-102798No hitNo description
PROSITE profilePS5129419.96750104IPR017930Myb domain
PfamPF002495.4E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-205699IPR009057Homeodomain-like
SMARTSM007172.9E-1057102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MATNGSSCTR KSSSTTINNR STLKKGPWTV SEDTILVEYV KKHGEGNWNA VQRNSGAFSA  60
DEERLIVELH AKLGNKWARM AAQLPGRTDN EIKNYWNTRF KRRQRAGLPI YPQDHQEHSS  120
LLPLSSSGHI INHTPLLFLD TFKPVPAVSV LPPHHYMNHT NTAFTRNELM RPLRDDGGLS  180
LSLAASNSSS SPSSLTAQPF YNQGFPSSLP MPSILESKSL NFGFSSDTCN TGMGVLELPL  240
IQTMVPPQAT PESSSSDDAE LYNEMETDFI PRGKSSGLLE DLIGESEALK DKFEGKSAWN  300
DIEGAVVGNF HEQYSDYSFG NGSVSSENNY EGMENKAEGD MINGVDDDLL INLLDNFPLS  360
VPIPDWSEEK GHVPSNLANG TNGEIESQPT DSRYNPDAAS SGVSEQERNF GHCHWNNMPS  420
IY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-17231035107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100282.21e-127transcription factor MYB101
TrEMBLA0A075BMI01e-96A0A075BMI0_SALMI; MYB-related transcription factor
STRINGMigut.M00456.1.p7e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-46myb domain protein 101