PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV17402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 167aa MW: 19135.7 Da PI: 8.8694 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 15 | 60 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++ Ed +l d+++ +G g+W+++++ g+ R++k c++rw + l KZV17402.1 15 SWSEKEDTKLTDYINVHGEGRWSKVPKSTGLQRCGKCCRLRWMNTL 60 7******************************************975 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.9e-14 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + ++E++l++++ ++lG++ W++Ia +++ gRt+ +++++w+++ KZV17402.1 70 FGEDEEDLIIRLYALLGNR-WSLIAGRLP-GRTDDEVRNHWHSH 111 679****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 9.686 | 8 | 60 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.8E-8 | 12 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 15 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.2E-25 | 15 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-11 | 15 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-8 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 18.224 | 61 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 68 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-13 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.67E-9 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MRKCCDSKRY TEESSWSEKE DTKLTDYINV HGEGRWSKVP KSTGLQRCGK CCRLRWMNTL 60 RPKSKQGNYF GEDEEDLIIR LYALLGNRWS LIAGRLPGRT DDEVRNHWHS HTKKKLIKMG 120 ADPSKHGLKL CPYTTFSCTK ILGPDGNMQD ESSGSINDPQ VSGRPEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-20 | 16 | 116 | 10 | 108 | B-MYB |
1h8a_C | 6e-20 | 16 | 116 | 30 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV17402.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023891126.1 | 1e-59 | transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 9e-48 | MYB6_ARATH; Transcription repressor MYB6 | ||||
Swissprot | Q9S9K9 | 1e-47 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A2Z7AEQ7 | 1e-121 | A0A2Z7AEQ7_9LAMI; Myb-related protein 308-like | ||||
STRING | XP_008240175.1 | 5e-56 | (Prunus mume) | ||||
STRING | Gorai.007G179300.1 | 7e-56 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 4e-50 | myb domain protein 6 |