PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV17168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33341.4 Da PI: 7.0262 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.7e-08 | 25 | 69 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+eE +++ +a + + ++ +W +a++++ g+t ++ + KZV17168.1 25 KWTPEENKRFENALAFFDKDtpdRWYNVAAMIP-GKTVSDVMKQYK 69 8********************************.****99988876 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky KZV17168.1 132 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 176 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.203 | 21 | 76 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-7 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.39E-12 | 25 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-6 | 25 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-6 | 25 | 72 | No hit | No description |
PROSITE profile | PS51294 | 21.067 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-17 | 127 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-18 | 128 | 180 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 129 | 176 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 129 | 179 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-12 | 132 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.41E-11 | 132 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDRETVQPWV RTSDWLFEEN KVITKWTPEE NKRFENALAF FDKDTPDRWY NVAAMIPGKT 60 VSDVMKQYKE LVEDVSDIEA GLIPIPGYAN NTFTLEWVSS HPCQGLKPLY NPGGKRVSSI 120 RGSDHERKKG VPWTEEEHRQ FLLGLKKYGK GDWRNISRNF VTTRTPTQVA SHAQKYFIRQ 180 VSGGKDKRRS SIHDITTVNL TETETSSRDK DLNRPDSPHT SALIMKSQQN LDEITGFVPE 240 MYESNVLQDP CSMMGFAPGN SSLIITHFPG NPSFGFDLYN GAIFQVQHAQ QH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-18 | 26 | 88 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV17168.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094978.1 | 1e-140 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-97 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2Z7A6D1 | 0.0 | A0A2Z7A6D1_9LAMI; Transcription factor DIVARICATA-like | ||||
STRING | XP_006480971.1 | 1e-114 | (Citrus sinensis) | ||||
STRING | XP_006429310.1 | 1e-114 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-105 | MYB family protein |
Publications ? help Back to Top | |||
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