PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV17164.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 283aa    MW: 32712.8 Da    PI: 5.2406
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV17164.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l   +   G  +W+ I++  g+ R++k+c++rw +yl
       KZV17164.1 14 RGPWTVEEDHKLMSFIMNNGIQCWRMIPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.71e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  ++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++
       KZV17164.1  67 RGVLSEMEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      67789*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-21563IPR009057Homeodomain-like
PROSITE profilePS5129415.038961IPR017930Myb domain
SuperFamilySSF466899.36E-2811108IPR009057Homeodomain-like
SMARTSM007172.5E-81363IPR001005SANT/Myb domain
PfamPF002495.6E-121461IPR001005SANT/Myb domain
CDDcd001672.22E-61661No hitNo description
PROSITE profilePS5129424.88362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2364117IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002494.6E-1567110IPR001005SANT/Myb domain
CDDcd001679.55E-1271110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTVE EDHKLMSFIM NNGIQCWRMI PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGVL SEMEENQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKRLG  120
LDPITHQPIQ QKTQQSHEEK SPDSRNENDE EEEIIISHVL KDPSETQVHT SCCNNISTET  180
ETETETETGT TSLINKYEML MLTSNLDMDL WMTNQEMDSI STGYRPSFSL EDSVNCYPNS  240
SASSILETSA PFHEFAETAD SMVSWDFGFN QFDQQFLFPD TMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV17164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554906.11e-110myb-related protein 315-like
TrEMBLA0A2Z7A6G20.0A0A2Z7A6G2_9LAMI; Myb-related protein 315
STRINGVIT_14s0219g00050.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-81myb domain protein 40