PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16876.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 310aa    MW: 34998.7 Da    PI: 5.3731
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16876.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-182370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l ++++++G g+W++ +r+ g++Rt+k+c++rw++yl
       KZV16876.1 23 RGPWTVEEDLTLMNYIARHGEGRWNSLSRCAGLNRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding51.42.6e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       KZV16876.1  76 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2991874IPR017930Myb domain
SuperFamilySSF466893.23E-3120117IPR009057Homeodomain-like
SMARTSM007179.7E-152272IPR001005SANT/Myb domain
PfamPF002497.8E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-222477IPR009057Homeodomain-like
CDDcd001676.29E-112570No hitNo description
PROSITE patternPS0017503847IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129418.70775125IPR017930Myb domain
SMARTSM007171.3E-1475123IPR001005SANT/Myb domain
PfamPF002495.2E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2378124IPR009057Homeodomain-like
CDDcd001673.70E-796119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEQMQAKANY SKSTEEEMAD LRRGPWTVEE DLTLMNYIAR HGEGRWNSLS RCAGLNRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAQATTS GGSGGAAVAA ASSYANSGAT  180
VYDLNDQSNT DFDVVSAQVL PPQPVYGDGG AHMYSPGSSS VVASSDSFGT AASDMTECYN  240
NYPVNQGNNQ DYYQGHEYLS NYADQSLISP TGCFQQGMDL SEDSCQWMNA VGDISDSLWN  300
DIDDVWFLQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24181232106B-MYB
1h8a_C2e-242011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.11e-122PREDICTED: transcription factor MYB108-like
TrEMBLA0A2Z7A5Y20.0A0A2Z7A5Y2_9LAMI; Uncharacterized protein
STRINGPOPTR_0008s10080.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.12e-85myb domain protein 108