PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16619.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 893aa    MW: 98978.3 Da    PI: 6.5656
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16619.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23132233199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       ++ ++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a+++ +gD+v+F   ++++ +l+
  KZV16619.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLTPPA-QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRIVAGDSVIFI--WNENNQLL 227
                 99***********************9****99666655.49************************************************..7888889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KZV16619.1 228 LGIRRA 233
                 ***997 PP
2Auxin_resp120.11.8e-39258341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++++sdldpvrWpnS+Wrs+k
  KZV16619.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITSISDLDPVRWPNSHWRSVK 341
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-47118261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-42123247IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-22131232No hitNo description
SMARTSM010197.9E-25132234IPR003340B3 DNA binding domain
PfamPF023627.1E-22132233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971132234IPR003340B3 DNA binding domain
PfamPF065072.3E-34258341IPR010525Auxin response factor
SuperFamilySSF542771.18E-7749832No hitNo description
PROSITE profilePS5174523.373758842IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MKLSSSSSTS GFDMQQGEEE KKCLNSELWH ACAGPLVSLP QIGSRVVYFP QGHSEQVTAS  60
TNKEVDATIP NYPGLSPQLI CQLHNLTMHA DLETEEVYAQ MTLQPLSPQD QKDICLLPAE  120
LGSPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSLTPPAQ ELIAKDLHGN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRI VAGDSVIFIW NENNQLLLGI RRANRSQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYAK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITSISDLDPV RWPNSHWRSV KVGWDESTAG EKQPRVSLWE  360
VEPLTTFPMY PSPFSLRLKR PWPSGLPFFP GLRDGDMSMN TSLGLLRGGM GDQGLNSLNF  420
QGFGASPWMQ PRLDMSVLGL QPDAYQVMAA APLQEAGSFD SSKLPNQQLL HFQQNLPNIS  480
ASLIQNQMPQ QSHSQQNFLP NFPESSVISQ AQILQQQLQL RQPFNDHHQQ QQLLQQSQHM  540
HPQFQEEQTK KTTPSGLQMG LTSEPQLSTS QLQNFTDIIA NHATSSNNSS MQSFLSSFSR  600
EGASHPANLL GPSPIVSPSS SSKRVAIDLQ FPSKVSQFGV PHPEELMISH AKVSDLPALL  660
PPFPGREYPD FHGATDAHNN LLFGVSTDTS AIIRSDMSTL RNGGNENESL SLPYAPLAFA  720
TAAGTNFPLN SDMTTSSCVV ESGYLPSENV DQTTPSHGTF VKVHKSGSFG RSFDISKFSS  780
YHELRSELAR MFGLQGLLED PQRSGWQLVF VDRENDVLLL GDDPWQEFVN NVWYIKILSP  840
LEVQQMGKEG FDLPNSVQTH QLSNSVNSCD DHMNRKDPRS ILNGIPTAGS LHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571636243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022850416.10.0auxin response factor 17-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2Z7A5930.0A0A2Z7A593_9LAMI; Auxin response factor
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]