PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16613.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 446aa    MW: 48545.3 Da    PI: 5.5756
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16613.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.19.7e-112864433374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lLl+cAe+v+ ++l  a +lL ++ el+sp g++ qR+ ayf+ AL+ar+ +s  ++y+ ++p  ++   +++ l+al++f+ v+P++kfsh+taNqa
  KZV16613.1  86 GLLLQCAECVAMDNLDDAGQLLPEIAELSSPFGSSAQRVGAYFADALSARIISSYLGIYSPFSPLCKT--LHQKLLNALQIFNSVTPLIKFSHFTANQA 182
                 58*********************************************************999887776..69999************************ PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I +a++g+++vHiiD+di+qGlQWp L++ Las++++  s+RiTg+gs    s+e l++tg+rLa+fA++l++pfef+ +  k  +  +l++L+vk gE
  KZV16613.1 183 IQQALDGADHVHIIDLDIMQGLQWPGLFHILASKSRKVKSFRITGFGS----SAELLNSTGQRLAEFATALNIPFEFQQIEGKIGNIKDLNQLNVKAGE 277
                 ************************************************....9**************************76666666699********* PP

        GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                 +++V++++  h l+d s+s         +++  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l +es er++vE++l+g ei+n+va
  KZV16613.1 278 TIVVHWMH--HCLYDVSGSDLG----ASRILTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLEAESVERHTVEQQLFGCEIRNIVA 369
                 *******9..778877777777....445566689*************.789*********************************************** PP

        GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   g +r+ + + +e+W++ l + GF+pv+l  + a+qa+lll +++++gy++ ee g+l lgWkd pL+++SaW+
  KZV16613.1 370 VGGPKRTGEVK-VERWEDELVRGGFRPVSLAGNPAAQANLLLGMFPWQGYTLVEEGGCLKLGWKDLPLLTASAWQ 443
                 *****998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.96958423IPR005202Transcription factor GRAS
PfamPF035143.4E-10986443IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLRSLLPTLQ YDPKASSPAM TSAGKRAVDL ASPSAAEPIK RHRTHLSPVE KDLQYEEEGA  60
DQLQAAAAGA SSAREDDDST GLRLLGLLLQ CAECVAMDNL DDAGQLLPEI AELSSPFGSS  120
AQRVGAYFAD ALSARIISSY LGIYSPFSPL CKTLHQKLLN ALQIFNSVTP LIKFSHFTAN  180
QAIQQALDGA DHVHIIDLDI MQGLQWPGLF HILASKSRKV KSFRITGFGS SAELLNSTGQ  240
RLAEFATALN IPFEFQQIEG KIGNIKDLNQ LNVKAGETIV VHWMHHCLYD VSGSDLGASR  300
ILTLLRPKLI TIVEQDLSHG GSFLGRFVEA LHYYSALFDA LGDGLEAESV ERHTVEQQLF  360
GCEIRNIVAV GGPKRTGEVK VERWEDELVR GGFRPVSLAG NPAAQANLLL GMFPWQGYTL  420
VEEGGCLKLG WKDLPLLTAS AWQPCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-155744449380Protein SCARECROW
5b3h_A1e-155744448379Protein SCARECROW
5b3h_D1e-155744448379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100390.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-172SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2Z7A7200.0A0A2Z7A720_9LAMI; Uncharacterized protein
STRINGXP_006481359.10.0(Citrus sinensis)
STRINGXP_006429765.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-169GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]