PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV16463.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Protein Properties

Length: 229aa MW: 25921 Da PI: 4.5183

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV16463.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.5	1.4e-24	113	202	1	86
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f kvltpsd++k++rlv pk+fa eh gg++ ++++++ d s + W+++++y+ +s+++v+t+GW+ Fvk++ Lk +D+v+F+ + KZV16463.1 113 FMKVLTPSDAGKLNRLVNPKRFAIEHfppiGGDEGDDVEVVFFDMSMKLWKFRFCYWSSSQTFVFTRGWNAFVKEKSLKPKDMVIFSTYE 202 89**************************9999**************************************************9433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-29	110	205	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.01E-24	111	198	No hit	No description
SuperFamily	SSF101936	4.71E-24	111	204	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.5E-22	113	204	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-13	113	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.012	113	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEEQQISLFV TSDAPAPLSD SESSIYQYPA EYAAPNSEAS SVMHQRNGFW GAYSCAHEDH 60 IWLGSFEAEE DAEFMAQQSA SAEFCGVAPN FLAARVDPAT LHENLGFNMR RLFMKVLTPS 120 DAGKLNRLVN PKRFAIEHFP PIGGDEGDDV EVVFFDMSMK LWKFRFCYWS SSQTFVFTRG 180 WNAFVKEKSL KPKDMVIFST YEHSDGLDEV GRVFSLDVLY NNNAEHPPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	8e-25	112	209	13	108	DNA-binding protein RAV1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV16463.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9C6P5	1e-38	RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBL	A0A2Z7A6L8	1e-171	A0A2Z7A6L8_9LAMI; Uncharacterized protein
STRING	GLYMA20G39140.2	3e-46	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5252	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	3e-32	RAV family protein