PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16452.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARR-B
Protein Properties Length: 627aa    MW: 69671.1 Da    PI: 6.207
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16452.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57.1e-29203256155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av++L G++kA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  KZV16452.1 203 KPRVVWSIELHRKFVAAVNHL-GIDKAVPKRILDMMNVEGLTRENVASHLQKYRL 256
                 79*******************.********************************8 PP
2Response_reg839.6e-28221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll+++l+k +y +v+++++++ al++l+e++  +Dli+ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  Ga 
    KZV16452.1  22 VLAVDDDPICLKLLETLLRKCQY-HVTTTSQARMALKMLRENKdrFDLIISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMQGVTHGAC 116
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ +eel++
    KZV16452.1 117 DYLVKPVRIEELRN 130
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.1E-1671624IPR017053Response regulator B-type, plant
SuperFamilySSF521724.13E-3619145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4219155No hitNo description
SMARTSM004482.4E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.35821136IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.0E-2522131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.89E-2923136No hitNo description
SuperFamilySSF466891.06E-19200260IPR009057Homeodomain-like
PROSITE profilePS5129412.282200259IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-30200261IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-25203256IPR006447Myb domain, plants
PfamPF002492.6E-6205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MIVEKTNLDN EQSVKFPAGL RVLAVDDDPI CLKLLETLLR KCQYHVTTTS QARMALKMLR  60
ENKDRFDLII SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NSDPKLVMQG VTHGACDYLV  120
KPVRIEELRN IWQHVIRRNK FDSKNQNTST DQCNSQPGSG EGYVSPTREN PDQHGKFNRK  180
RKEEEDDSED NGNESEDPAT QKKPRVVWSI ELHRKFVAAV NHLGIDKAVP KRILDMMNVE  240
GLTRENVASH LQKYRLYLKR ISHVTTQQAN MAAAFGIKDS PFMRMGSLDG LGDFRTLSGP  300
GRLGNVALSP YATSGVLGRL NSPANMNLRN LTQSPLVQPT HSPNLSNLVG KTHPVLLSSS  360
QNPSLFQGMP SLDLDQIQQK GPLNFNGMDD SKIFAAANTF TDSGAVIGSS SNLFSSNGNN  420
PMMLVRGFGN TSSSNMTSFS SESFNTGITC PSNLLDPGKC NENWQNTIES PKIQPNSLLS  480
TNPFHPQLPL NRMRDNNSST ASYSQNNPII ASVLPQDSRE RSCQDLVSDI QNTNQTTNQR  540
WVEQKQNYRQ IPNNAFGSLN SQTPENGIFE QKIDEFINSR SSGGGFVHQS YDSLDDLMNA  600
MIKREQDETA ANCDFGFDDY AAFGQGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25201262364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078598.10.0two-component response regulator ARR12
SwissprotB8AEH11e-133ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X61e-133ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2Z7AC150.0A0A2Z7AC15_9LAMI; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-123response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]