PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV16421.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 676aa    MW: 74398 Da    PI: 7.5119
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV16421.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.8e-23111212199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +   +++ l
  KZV16421.1 111 FSKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--DNRDL 205
                 88****************************998666666..699**********************************************43..67777 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  KZV16421.1 206 CVGIRRA 212
                 ****996 PP
2Auxin_resp106.62.9e-35277357483
  Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+++++FevvY+Prast+eF+vk+++v +a++v++  GmRfkmafe eds+++++  Gt+++v+ +dpv WpnS Wr+L+
  KZV16421.1 277 LAANGQPFEVVYYPRASTPEFCVKAASVTAAMRVQWRSGMRFKMAFEAEDSARISWfVGTIASVQIADPVTWPNSTWRLLQ 357
                 5789***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-38102216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-30103222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-21110211No hitNo description
SMARTSM010194.4E-22111213IPR003340B3 DNA binding domain
PfamPF023622.5E-21111212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.76111213IPR003340B3 DNA binding domain
PfamPF065071.9E-30277357IPR010525Auxin response factor
PROSITE profilePS5174515.305568648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MEVAEKFLNS ELWHACAGGM VQMPALNSKV FYFPQGHAEH TLTTVDFGGL PRIPAMILCR  60
VGAVQYLADR ETDEVYARIR LIPVGGGELC LENDGVMGSN GSESNEKPSS FSKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYTADPPVQN VIAKDVHGET WKFRHIYRGT PRRHLLTTGW  180
STFVNQKKLV AGDSIVFLRA DNRDLCVGIR RAKRCGGGGG AEYPSLWNSV SAGNYGGFSS  240
FLNGEENKVM IHRGFGNGNA RESGRVRPES VLESAFLAAN GQPFEVVYYP RASTPEFCVK  300
AASVTAAMRV QWRSGMRFKM AFEAEDSARI SWFVGTIASV QIADPVTWPN STWRLLQVTW  360
DEPDLLQNVK CVSPWLVEMV TNMPVLHISP FSPARKKLRL PHHPDFPLDG SQFPMPSFLG  420
NPLAPVSPFC HLPDNLTAGI QGARHAQIGV PYSDLHLNNK LQMEFFPVTI PQHSPWAKIP  480
KKTGRFNVEG NENISCLLSI GNCCPKSHVY DGVKKPQFVL FGKPILTEQQ MSCDNVSESF  540
DLDGQDLSKA LSATTQSKPK RAELGLDAYL CKVFLESEDV GRSIDLSILG SYEELFLSLE  600
NILGIQSSEL MTHVCYFDAA GAVKRAGDGP FSEFKKTAKR LTILMKPKSN IAERKLITGL  660
PVAEHGLEAG PLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-79837851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV16421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089288.10.0auxin response factor 18 isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2Z7A5A80.0A0A2Z7A5A8_9LAMI; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]