PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV16022.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 317aa MW: 35421.7 Da PI: 5.7637

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV16022.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.3e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL +kv++ ++ + ++i++vd +k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+l+ +++ KZV16022.1 6 LPPGFRFHPTDEELITYYLSNKVADFDFAA-RAIADVDFNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEILRGvDSA 103 79***********************999.89***********999999***********************************988899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grapkgekt+Wvmheyr+ KZV16022.1 104 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRI 133 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-64	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	60.413	6	154	IPR003441	NAC domain
Pfam	PF02365	5.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEENNLPPGF RFHPTDEELI TYYLSNKVAD FDFAARAIAD VDFNKCEPWD LPAKASMGEK 60 EWYFFSLRDR KYPTGLRTNR ATEAGYWKTT GKDKEILRGV DSALVGMKKT LVFYRGRAPK 120 GEKTNWVMHE YRIESKNAIK PTKEEWVVCR VFQKSLIVKK PQQTASSPQS QESPSDANAM 180 VNELQDMEYF QNFSNTMPII SPSTNIATQS YNNDNIANWG AAANSLQSLT NWPLLSTNLS 240 MNSLFLTALQ LRGGHSHPTG AAMGAMEGYS LMPQGSSSPF GNDFGATFGM GSSSSRLLGD 300 DQPPAPEQSY NLDSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	1	154	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	1	154	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	1	154	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	1	154	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-56	1	154	12	165	NAC domain-containing protein 19
4dul_B	4e-56	1	154	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV16022.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096994.1	1e-147	NAC domain-containing protein 92
Swissprot	Q9FLJ2	3e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z7AAS6	0.0	A0A2Z7AAS6_9LAMI; Uncharacterized protein
STRING	Migut.D01478.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-97	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]