PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV15986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17682.2 Da PI: 10.55 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++ KZV15986.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 56.2 | 1.5e-19 | 63 | 125 | 37 | 99 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 h++GedL+sL lkeLq+Le+qL++slk+iR++K++ l eq + l k+ ke ++e r+++e KZV15986.1 63 HYMGEDLDSLRLKELQSLEHQLDTSLKHIRTRKDKALQEQNNLLAKRLKEKEKESSVTRNQWE 125 9*********************************************99999999888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.91E-35 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-29 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.629 | 40 | 130 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-14 | 63 | 119 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD 60 SWHYMGEDLD SLRLKELQSL EHQLDTSLKH IRTRKDKALQ EQNNLLAKRL KEKEKESSVT 120 RNQWEQVQSH ELNSPSFGLR QPLSSLNIRN VI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 75 | 1 | 68 | MEF2C |
5f28_B | 3e-20 | 1 | 75 | 1 | 68 | MEF2C |
5f28_C | 3e-20 | 1 | 75 | 1 | 68 | MEF2C |
5f28_D | 3e-20 | 1 | 75 | 1 | 68 | MEF2C |
6bz1_A | 4e-20 | 1 | 75 | 1 | 68 | MEF2 CHIMERA |
6bz1_B | 4e-20 | 1 | 75 | 1 | 68 | MEF2 CHIMERA |
6bz1_C | 4e-20 | 1 | 75 | 1 | 68 | MEF2 CHIMERA |
6bz1_D | 4e-20 | 1 | 75 | 1 | 68 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV15986.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773500.1 | 3e-73 | agamous-like MADS-box protein AGL8 homolog isoform X3 | ||||
Swissprot | Q42429 | 2e-62 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A2Z7A3D0 | 1e-106 | A0A2Z7A3D0_9LAMI; Transcription factor | ||||
STRING | XP_009792071.1 | 4e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-50 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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