PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15244.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 281aa    MW: 31759.6 Da    PI: 7.563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15244.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-093076347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE + + +a +++ ++   +W+ +a++++ g+t++++   ++++
       KZV15244.1 30 KWTPEENKSFENALALFDKDtpdRWRNVAAMIP-GKTEEDVMKQYRDL 76
                     7********************************.********999976 PP
2Myb_DNA-binding43.66.7e-14129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
       KZV15244.1 129 PWSEEEHRLFLLGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 173
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-52577IPR009057Homeodomain-like
PROSITE profilePS512937.8532681IPR017884SANT domain
SMARTSM007174.5E-92779IPR001005SANT/Myb domain
CDDcd001671.44E-73077No hitNo description
SuperFamilySSF466899.33E-123084IPR009057Homeodomain-like
PfamPF002492.4E-83076IPR001005SANT/Myb domain
PROSITE profilePS5129419.804122178IPR017930Myb domain
SuperFamilySSF466891.0E-16123177IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-17125177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-12126173IPR009057Homeodomain-like
SMARTSM007171.0E-12126176IPR001005SANT/Myb domain
CDDcd001677.52E-11129174No hitNo description
PfamPF002492.8E-11129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDGVIMGPLN SAASCFGNPN WLLEENRGAK WTPEENKSFE NALALFDKDT PDRWRNVAAM  60
IPGKTEEDVM KQYRDLVEDV FDIEAGLVPL PGYRNDDTLT SDWESKYGLL GKRSSSIRSS  120
EQERKKGVPW SEEEHRLFLL GLKKYGKGDW RNISRNFVTS RTPTQVASHA QKYFIRQLSV  180
GKDKRRSSIH DITTANVTES KPKNSSASPD DTIVTEKAQQ NSDVKSVFRG LCDSSLTYPG  240
EIIGFSTPNL ALNLQQYYLQ SIYPLGFGFS FGHLMQPTRN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-202894874RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094978.11e-112transcription factor DIVARICATA-like
SwissprotQ8S9H74e-87DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2Z7A1690.0A0A2Z7A169_9LAMI; Transcription factor DIVARICATA-like
STRINGSolyc09g014250.2.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-75MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]