PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV15130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 22910.2 Da PI: 9.3498 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.7 | 9.8e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvt++kR+ gi KKA+EL vLCd++vav++fs+tg+l +++s KZV15130.1 10 RIENATTRQVTYAKRKDGIVKKASELAVLCDTDVAVVMFSPTGRLTTFAS 59 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.26E-26 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGRKKLAMRR IENATTRQVT YAKRKDGIVK KASELAVLCD TDVAVVMFSP TGRLTTFASN 60 GRVEDIFLRF VDRPDELRGG PIANEEFLSE RLKQLKYEGE MLEKIATYYE PSVEKINTVL 120 EAGVYQQFLT SAIQRVQLSK LQAAIVPMDD TTTSVAHHTV NQSRMSPGKD DDEGGTMGPH 180 LSLSFLEAKK RWEKIRNVTV NPTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-15 | 1 | 78 | 1 | 79 | MEF2C |
5f28_B | 5e-15 | 1 | 78 | 1 | 79 | MEF2C |
5f28_C | 5e-15 | 1 | 78 | 1 | 79 | MEF2C |
5f28_D | 5e-15 | 1 | 78 | 1 | 79 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV15130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549788.1 | 1e-89 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 3e-28 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A2Z7A856 | 1e-150 | A0A2Z7A856_9LAMI; AGAMOUS-like 66 isoform 1 | ||||
STRING | Migut.H01211.1.p | 5e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 1e-30 | AGAMOUS-like 67 |
Publications ? help Back to Top | |||
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