PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14653.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 468aa    MW: 52623.6 Da    PI: 5.6609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14653.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS468.34.2e-143464651374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA++vssg+le+a+ +L ++s+laspdgd+mqR+a+yf eALa r++r+++++yka+++++ s   +see+++ k+f+e+ P++k+++++ N
  KZV14653.1  46 LIHLLVTCANHVSSGSLENANIALDQISHLASPDGDTMQRIASYFSEALADRILRTWPGVYKAFRSTRIS--IVSEEIFVKKMFFELLPFVKVAFVISN 142
                 689************************************************************9988887..6************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI+ea+ege++vH+iD+++++++QW aL++ L++Rpegpp+lRiTg+++    +ke le++++ L++ Ae+l++pf+fn+ ++++le+l++e+Lrvk+
  KZV14653.1 143 QAIVEAMEGERMVHVIDLNVTEPAQWCALIRDLSARPEGPPHLRITGIHQ----QKEVLEQMAHILTEEAEKLDIPFQFNP-IVSKLENLDVEKLRVKT 236
                 **************************************************....9**************************.7999************* PP

        GRAS 199 gEalaVnlvlqlhrll.......................................................desvsles....erdevLklvkslsPkv 238
                 gEala+++++qlh+ll                                                             +s    ++d++L+++++lsPkv
  KZV14653.1 237 GEALAISSMMQLHSLLasdselkkspptpmnaigihlqrvalmnqgtlgellekdmvngyspsadsassspL-----SSigssNIDTFLNAIWGLSPKV 330
                 ****************************************************************99764432.....22234468************** PP

        GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                 +vv+eq++dhn++s++er++e+l++y+alfd+le+ lpr+s er  +E++ lg+ei+nv+aceg er+erhe+lekW++r+e aGF +vpls++a+ qa
  KZV14653.1 331 MVVTEQDSDHNGKSLMERLSESLYFYAALFDCLESALPRASLERLRMEKM-LGEEIKNVIACEGLERKERHEKLEKWNQRFELAGFASVPLSYYAMLQA 428
                 **************************************************.************************************************ PP

        GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 k+ll+ ++ dgy+++ee+gs+v++W+drpL+svSaWr
  KZV14653.1 429 KRLLQSYSCDGYKIKEENGSVVICWQDRPLLSVSAWR 465
                 ************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.04720445IPR005202Transcription factor GRAS
PfamPF035141.5E-14046465IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MFQEDGSSSV TSSPLQMFPM MSLSPGFMSP YPWLKDLKPE ERGLYLIHLL VTCANHVSSG  60
SLENANIALD QISHLASPDG DTMQRIASYF SEALADRILR TWPGVYKAFR STRISIVSEE  120
IFVKKMFFEL LPFVKVAFVI SNQAIVEAME GERMVHVIDL NVTEPAQWCA LIRDLSARPE  180
GPPHLRITGI HQQKEVLEQM AHILTEEAEK LDIPFQFNPI VSKLENLDVE KLRVKTGEAL  240
AISSMMQLHS LLASDSELKK SPPTPMNAIG IHLQRVALMN QGTLGELLEK DMVNGYSPSA  300
DSASSSPLSS IGSSNIDTFL NAIWGLSPKV MVVTEQDSDH NGKSLMERLS ESLYFYAALF  360
DCLESALPRA SLERLRMEKM LGEEIKNVIA CEGLERKERH EKLEKWNQRF ELAGFASVPL  420
SYYAMLQAKR LLQSYSCDGY KIKEENGSVV ICWQDRPLLS VSAWRFKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-54294641377Protein SCARECROW
5b3h_D2e-54294641377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022898321.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2Z7A0K60.0A0A2Z7A0K6_9LAMI; Scarecrow-like 3
STRINGMigut.N02362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]