PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV14653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GRAS | ||||||||
Protein Properties | Length: 468aa MW: 52623.6 Da PI: 5.6609 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 468.3 | 4.2e-143 | 46 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA++vssg+le+a+ +L ++s+laspdgd+mqR+a+yf eALa r++r+++++yka+++++ s +see+++ k+f+e+ P++k+++++ N KZV14653.1 46 LIHLLVTCANHVSSGSLENANIALDQISHLASPDGDTMQRIASYFSEALADRILRTWPGVYKAFRSTRIS--IVSEEIFVKKMFFELLPFVKVAFVISN 142 689************************************************************9988887..6************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaI+ea+ege++vH+iD+++++++QW aL++ L++Rpegpp+lRiTg+++ +ke le++++ L++ Ae+l++pf+fn+ ++++le+l++e+Lrvk+ KZV14653.1 143 QAIVEAMEGERMVHVIDLNVTEPAQWCALIRDLSARPEGPPHLRITGIHQ----QKEVLEQMAHILTEEAEKLDIPFQFNP-IVSKLENLDVEKLRVKT 236 **************************************************....9**************************.7999************* PP GRAS 199 gEalaVnlvlqlhrll.......................................................desvsles....erdevLklvkslsPkv 238 gEala+++++qlh+ll +s ++d++L+++++lsPkv KZV14653.1 237 GEALAISSMMQLHSLLasdselkkspptpmnaigihlqrvalmnqgtlgellekdmvngyspsadsassspL-----SSigssNIDTFLNAIWGLSPKV 330 ****************************************************************99764432.....22234468************** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 +vv+eq++dhn++s++er++e+l++y+alfd+le+ lpr+s er +E++ lg+ei+nv+aceg er+erhe+lekW++r+e aGF +vpls++a+ qa KZV14653.1 331 MVVTEQDSDHNGKSLMERLSESLYFYAALFDCLESALPRASLERLRMEKM-LGEEIKNVIACEGLERKERHEKLEKWNQRFELAGFASVPLSYYAMLQA 428 **************************************************.************************************************ PP GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 k+ll+ ++ dgy+++ee+gs+v++W+drpL+svSaWr KZV14653.1 429 KRLLQSYSCDGYKIKEENGSVVICWQDRPLLSVSAWR 465 ************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.047 | 20 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-140 | 46 | 465 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MFQEDGSSSV TSSPLQMFPM MSLSPGFMSP YPWLKDLKPE ERGLYLIHLL VTCANHVSSG 60 SLENANIALD QISHLASPDG DTMQRIASYF SEALADRILR TWPGVYKAFR STRISIVSEE 120 IFVKKMFFEL LPFVKVAFVI SNQAIVEAME GERMVHVIDL NVTEPAQWCA LIRDLSARPE 180 GPPHLRITGI HQQKEVLEQM AHILTEEAEK LDIPFQFNPI VSKLENLDVE KLRVKTGEAL 240 AISSMMQLHS LLASDSELKK SPPTPMNAIG IHLQRVALMN QGTLGELLEK DMVNGYSPSA 300 DSASSSPLSS IGSSNIDTFL NAIWGLSPKV MVVTEQDSDH NGKSLMERLS ESLYFYAALF 360 DCLESALPRA SLERLRMEKM LGEEIKNVIA CEGLERKERH EKLEKWNQRF ELAGFASVPL 420 SYYAMLQAKR LLQSYSCDGY KIKEENGSVV ICWQDRPLLS VSAWRFKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-54 | 29 | 464 | 1 | 377 | Protein SCARECROW |
5b3h_D | 2e-54 | 29 | 464 | 1 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV14653.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022898321.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2Z7A0K6 | 0.0 | A0A2Z7A0K6_9LAMI; Scarecrow-like 3 | ||||
STRING | Migut.N02362.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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