PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14338.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 177aa    MW: 19850.6 Da    PI: 4.7563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14338.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.5e-1688173487
                 E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 vl+psdv+k+++l +p++fa +h    gg++  ++++++ d s + W++ ++y+ +s+ ++l    + Fvk+n Lk +D+v F+  +r
  KZV14338.1  88 VLIPSDVGKLNQLAIPNRFAIKHfppiGGDEGDDVEVVFFDMSTKLWKFWYCYWSRSQPTFLP--DNAFVKENCLKPKDMVSFSAYER 173
                 799************************9999********************************..589***************95444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1780170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-1682170IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.007985177IPR003340B3 DNA binding domain
CDDcd100171.80E-1588176No hitNo description
PfamPF023622.6E-1388173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEEQQISLFV TSNAPTPLSD SESSMYPYPV EYAAPNYEAS CVMPGVVNGM DSGVRTYVPT  60
KVTFGFDLLK PRMLNLRLSN AHPLSSVVLI PSDVGKLNQL AIPNRFAIKH FPPIGGDEGD  120
DVEVVFFDMS TKLWKFWYCY WSRSQPTFLP DNAFVKENCL KPKDMVSFSA YERTDGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-148117610105DNA-binding protein RAV1
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022154108.12e-23AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A2Z6ZYF71e-129A0A2Z6ZYF7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-14related to ABI3/VP1 1