PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV14291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28507 Da PI: 8.4609 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79 | 8.9e-25 | 12 | 106 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+e+GFs r+s+skk+k ++e+++++fvC keg+++e +++ +ek++r+r rtgCk ++ + k + +w v+++ + HnH+l+ KZV14291.1 12 SFYNQYAREAGFSARISNSKKNKGTNEVVWKKFVCFKEGRTSEWNNQakvgQEKQERSRGGVRTGCKSRISIVKVQtGPNWAVSNFIESHNHPLS 106 5****************************************99988889999999999************998888799**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.4E-22 | 12 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
GMEFTSIEDA FSFYNQYARE AGFSARISNS KKNKGTNEVV WKKFVCFKEG RTSEWNNQAK 60 VGQEKQERSR GGVRTGCKSR ISIVKVQTGP NWAVSNFIES HNHPLSTPSK VHLLRSHRNV 120 SAAKKSLTQQ FSEANVPTCQ QMQLLEIEYG GLERVGCTER DIRNFETALR DEQKGIDAET 180 LIEFFESEKD KNSSFFFTYE TDSENRFSRC FWADPVLRKA YIVFGDVVVF DTTYNTNRYG 240 MIFAPLLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV14291.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878435.1 | 1e-109 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6ZZ16 | 0.0 | A0A2Z6ZZ16_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006428864.1 | 5e-80 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-48 | FAR1-related sequence 5 |