PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV14225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26657.7 Da PI: 6.9615 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 109 | 2.3e-34 | 82 | 188 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ltpsdv+k++rlv+pk++ae++ +g+ e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gDfvvF+++ + + KZV14225.1 82 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggggDGEGEKGFLLSFEDEAGKPWKFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDFVVFYRHLAEADR 180 99******************************9966667999*************************************************87668888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ KZV14225.1 181 LFIGWRRR 188 9****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-41 | 74 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-31 | 78 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.90E-28 | 80 | 173 | No hit | No description |
Pfam | PF02362 | 4.6E-31 | 82 | 188 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.494 | 82 | 189 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-26 | 82 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSINHYSSDQ IPEPHFYMMD SSSPGQNPIF FSRLMPKIAT TSRPTSDEHM VMSSADDGDS 60 KSSSSLFLDL DQNQRREKEH LFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GGGGGDGEGE 120 KGFLLSFEDE AGKPWKFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDFVV FYRHLAEADR 180 LFIGWRRRHS GEEGGGAQAV AGRGMFYNPS QNQMQVQGCS TSPSYQPECV HSGVFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-48 | 77 | 188 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-48 | 77 | 188 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV14225.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600245.1 | 3e-67 | PREDICTED: B3 domain-containing protein At2g36080-like isoform X1 | ||||
Refseq | XP_009600246.1 | 3e-67 | PREDICTED: B3 domain-containing protein At2g36080-like isoform X2 | ||||
TrEMBL | A0A2Z7A5J5 | 1e-176 | A0A2Z7A5J5_9LAMI; Uncharacterized protein | ||||
STRING | XP_009600245.1 | 1e-66 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3801 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 3e-55 | B3 family protein |