PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV13941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27202.5 Da PI: 6.2953 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 38.7 | 1.7e-12 | 109 | 141 | 24 | 56 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 y + +++ LA++l+L rqV vWFqNrRa+ k KZV13941.1 109 YSNIKQKLALANQLNLRPRQVEVWFQNRRARTK 141 567789999**********************98 PP | |||||||
2 | HD-ZIP_I/II | 93.3 | 2.7e-30 | 109 | 176 | 23 | 91 |
HD-ZIP_I/II 23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + ++K +la++L+l+prqv+vWFqnrRARtk+kq E+d+e+Lkr++++l+een+rL+ke ++Lr +l KZV13941.1 109 YSNIKQKLALANQLNLRPRQVEVWFQNRRARTKLKQNEVDCEYLKRCCETLSEENTRLHKELQDLR-AL 176 55789************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 8.9E-4 | 87 | 147 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-11 | 108 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.471 | 108 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.50E-7 | 109 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 109 | 141 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.8E-10 | 109 | 141 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.3E-20 | 143 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.1E-8 | 143 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MELGLRLGDA SEPVMFLREN RSQETERFTK IRKSSGSNLG MDLSLNQEME KTREENGEKE 60 DDHISEGVAS DGYQGETLLQ LNLLPFSPVP RQISSHVESL PWSSDNGEYS NIKQKLALAN 120 QLNLRPRQVE VWFQNRRART KLKQNEVDCE YLKRCCETLS EENTRLHKEL QDLRALKTPN 180 SNPFYMATTL TMCPSCERQR LAAAPESGKL TNIDSTPNPN PTPFPLSTPR FYPWRNQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARTKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV13941.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849795.1 | 1e-52 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
TrEMBL | A0A2Z6ZXZ9 | 1e-175 | A0A2Z6ZXZ9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01361.1.p | 4e-52 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-45 | homeobox from Arabidopsis thaliana |