PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV13832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB_related | ||||||||
Protein Properties | Length: 163aa MW: 18685.4 Da PI: 4.3276 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38 | 3.8e-12 | 8 | 49 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++v+q+G++ ++I + ++ gRt+ q+k+++ k KZV13832.1 8 RWSKQDTELFYEGVRQFGTD-LSLIQQLFP-GRTRRQVKLKYKK 49 8*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.701 | 1 | 55 | IPR017884 | SANT domain |
Pfam | PF15963 | 9.2E-27 | 3 | 81 | No hit | No description |
SMART | SM00717 | 1.6E-8 | 5 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.95E-8 | 8 | 49 | No hit | No description |
SuperFamily | SSF46689 | 2.92E-11 | 8 | 55 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-7 | 8 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MDKTPIARWS KQDTELFYEG VRQFGTDLSL IQQLFPGRTR RQVKLKYKKE EREQPLRLSD 60 ALTNRAKDHS HFEAVIVRLQ QIAAEENENA DKDGSIELGD NDVTDVGIPN VSDVNDEEAK 120 NEQVEGHEKE EDVGQVLAED GSPLKSYDSD DDLFRWSQYK SDT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV13832.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076930.1 | 5e-62 | transcription factor TFIIIB component B''-like | ||||
TrEMBL | A0A2Z7A4W1 | 1e-116 | A0A2Z7A4W1_9LAMI; Transcription factor TFIIIB component B''-like | ||||
STRING | XP_009761824.1 | 2e-58 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5902 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 6e-32 | MYB_related family protein |