PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV06723.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YB
Protein Properties Length: 104aa    MW: 12130.1 Da    PI: 7.9367
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV06723.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB94.21.1e-291633597
       NF-YB 35 vqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                +qecv+efisfvt+eas kc +ekrk +ngdd++wal tlGf++y+e+lk yl+k+re+e+e+
  KZV06723.1  1 MQECVTEFISFVTGEASAKCFKEKRKIVNGDDICWALVTLGFDEYAEALKRYLRKHREAEEER 63
                79*********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.92E-21167IPR009072Histone-fold
PfamPF008086.4E-11137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.7E-28171IPR009072Histone-fold
PRINTSPR006156.9E-18119No hitNo description
PRINTSPR006156.9E-182038No hitNo description
PRINTSPR006156.9E-183957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MQECVTEFIS FVTGEASAKC FKEKRKIVNG DDICWALVTL GFDEYAEALK RYLRKHREAE  60
EERVNHNKVK DAPVLVNLGL NSMEKREYRN MGCQNIEKIM VMIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-231583592Transcription factor HapC (Eurofung)
4g92_B4e-231583592Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV06723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082631.13e-34nuclear transcription factor Y subunit B-5-like
SwissprotO822487e-30NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2Z7BEB65e-71A0A2Z7BEB6_9LAMI; Uncharacterized protein
STRINGXP_007144547.12e-33(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-32nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]