PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9787.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 283aa    MW: 31392.8 Da    PI: 6.362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9787.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-061742111254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Dca9787.1 174 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 211
                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.189162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11172224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-6172215No hitNo description
Gene3DG3DSA:4.10.280.104.9E-9176219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTTSSNTSQD SSTITSDQIG LSTSFPMNSS ASYLIHTLFD DDVVDQSQLI NTNNYGYTSE  60
WAQSSMNNTA SIRPPLSPPV SLELPQSEQF NGGINMMVNN DVRQLSEEQF NNTDALSNIR  120
ASLLNSLQSR SRATKLKDEV VHEPKRKANN NEQPTTSKRP RIETPSSLPT FKVRKEKLGD  180
RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVNGLSA PYLKNGGTAQ HQQVSTRTNV  240
NEETKQNLQC RGLCVVPISN TYPFTQETPV DFWTPTFGGT TSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021726287.15e-91transcription factor bHLH112-like
SwissprotQ8GXT39e-50BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0K9QND03e-82A0A0K9QND0_SPIOL; Uncharacterized protein
STRINGXP_010665766.11e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]