PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9561.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 378aa    MW: 41996.3 Da    PI: 7.9683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9561.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0984109127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC  f+  G+C+ G++C+FaHg+
  Dca9561.1  84 FKTRLCVKFRM-GQCRNGENCNFAHGE 109
                69*********.*************96 PP
2zf-CCCH27.84.2e-09153176225
                -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                k++lC+ ++ + +C+yG+rC+F H
  Dca9561.1 153 KMKLCKKYYNGEECPYGERCNFLH 176
                789*******66************ PP
3zf-CCCH39.87.5e-13252278127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C+ f  tG+C++Gd+C++aHg+
  Dca9561.1 252 WKTRRCMKFETTGYCPFGDNCHYAHGQ 278
                8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1481116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-881114IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-683109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.72383110IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-684109IPR000571Zinc finger, CCCH-type
SMARTSM003560.013151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225151179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7151178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-9153177IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6153176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-13248280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-9249280IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009251279IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10252278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGSSEPFSQF VQFSDGMDSL GFWPQFPASN EQSDVNPQFD YDPPSKRVKN SADNHPNHHH  60
HRSPPNNNNN NNPPVNQPTG RIFFKTRLCV KFRMGQCRNG ENCNFAHGED DLRKPPPNWQ  120
DLVSNRNDDR GNSGSNAGNG NENWEDDDKI IHKMKLCKKY YNGEECPYGE RCNFLHKDPP  180
KFRDVGPPPP PRFRDSGSRE SSAISIGTTG PPVGSARPSD QSEVNRNAVT VSTTAVGVGV  240
DASRGNSRPV YWKTRRCMKF ETTGYCPFGD NCHYAHGQAD WLIDSRPSKR VIRVGFGSSQ  300
FGSELLLPGG RPADSEPTLG SGVPLKSVPS AADPTPVKTE AVFPADEGQS KKSLLKWNST  360
KKINRIYGDW LDDLDLPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741659.11e-148zinc finger CCCH domain-containing protein 39-like isoform X1
RefseqXP_021741660.11e-148zinc finger CCCH domain-containing protein 39-like isoform X2
TrEMBLA0A0K9R3T91e-143A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-71C3H family protein