PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca9340.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Dof

Protein Properties

Length: 466aa MW: 51323.1 Da PI: 6.5094

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca9340.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	5.9e-40	134	194	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Dca9340.1 134 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSA 194 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	131	191	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	136	192	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	138	192	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	140	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MAEVKDPAIK LFGKTIPLSD DVIAEELSSS FDDNKNNKNK NISNIEDNDY NNNFSHGRDI 60 NNKGDHDVNT CQIEESEALC QGLRRNAFQE TAAERAENLE ASSDTYEKVM LEPSNSEEEK 120 TDSSVSQEKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN 180 VPVGAGRRKN KSSASHFRQI TVPEAVQCNR SDIPNGTHPF GSDSPLCESM TSILSLADKS 240 NEFRKLQDLK VQIPFIAVET GGQLNGSNLE DATSSSPKEQ ALRNCLAYPA QVPGYPGPPW 300 PYPWNSSQWS PPVAAPPFCP GGFALPFYPA PAYWGCTVPG TWSIPLIPQP FSASQSPPSS 360 GPNSPTLGKH SRDGSMLTST SSEESQSLWI PKTLRIDDPK EAAKSSIWTT LGIKSSEKPK 420 SISRGSGLFK AFQPKCDDKT RNLEKSAAME ANPAALSRSS NFQENM

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MAEVKDPAIK LFGKTIPLSD DVIAEELSSS FDDNKNNKNK NISNIEDNDY NNNFSHGRDI  60
NNKGDHDVNT CQIEESEALC QGLRRNAFQE TAAERAENLE ASSDTYEKVM LEPSNSEEEK  120
TDSSVSQEKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN  180
VPVGAGRRKN KSSASHFRQI TVPEAVQCNR SDIPNGTHPF GSDSPLCESM TSILSLADKS  240
NEFRKLQDLK VQIPFIAVET GGQLNGSNLE DATSSSPKEQ ALRNCLAYPA QVPGYPGPPW  300
PYPWNSSQWS PPVAAPPFCP GGFALPFYPA PAYWGCTVPG TWSIPLIPQP FSASQSPPSS  360
GPNSPTLGKH SRDGSMLTST SSEESQSLWI PKTLRIDDPK EAAKSSIWTT LGIKSSEKPK  420
SISRGSGLFK AFQPKCDDKT RNLEKSAAME ANPAALSRSS NFQENM

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693252.1	0.0	PREDICTED: cyclic dof factor 2 isoform X1
TrEMBL	A0A0K9QDN9	1e-171	A0A0K9QDN9_SPIOL; Uncharacterized protein
STRING	XP_010693252.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-82	cycling DOF factor 2