PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca9155.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 309aa MW: 32883 Da PI: 10.0084

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca9155.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	34	58	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++Gd+C+F+H Dca9155.1 34 KSKPCTKFFSTSGCPFGDSCHFSHH 58 7789********************6 PP
2	zf-CCCH	25.8	1.8e-08	94	119	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C++f+ Ck+Gd+C++aHg+ Dca9155.1 94 KTRICKRFSSAEGCKFGDKCHYAHGE 119 8***********************96 PP
3	zf-CCCH	25.4	2.5e-08	276	301	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C +f + GtC +Gd+C+ aHg+ Dca9155.1 276 FKTKICENFTK-GTCTFGDKCHLAHGE 301 69*******.********99995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.526	32	60	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.011	32	59	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	33	60	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-7	34	58	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	34	58	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-8	91	123	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-13	91	124	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.239	92	120	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-4	92	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-6	94	119	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF54791	1.29E-13	156	231	IPR004088	K Homology domain, type 1
Gene3D	G3DSA:3.30.1370.10	1.2E-14	156	230	IPR004088	K Homology domain, type 1
SMART	SM00322	1.0E-10	159	229	IPR004087	K Homology domain
PROSITE profile	PS50084	13.858	160	224	IPR004088	K Homology domain, type 1
Pfam	PF00013	7.9E-10	162	225	IPR004088	K Homology domain, type 1
CDD	cd00105	1.14E-10	162	224	No hit	No description
Gene3D	G3DSA:4.10.1000.10	4.0E-13	272	306	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-7	275	305	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-7	275	301	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.685	275	302	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-6	276	301	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDGRKRRQDG GASNVNGGFK KHKQETDSSG IGSKSKPCTK FFSTSGCPFG DSCHFSHHVP 60 RGYNVMAQMM NLPTIAKVGP PPLQAQNGTA PTVKTRICKR FSSAEGCKFG DKCHYAHGEW 120 ELNKPVMISF EDHAMQGRYG LRNDPPGSRG LAGGFGESDN ATVKIGVDSA LVGAIIGKSG 180 VNSKQISHHT GVKLSIRDHE SNPNLKNIEL QGSFDQIKIA TTMVRDLVAN VSASAFTKGM 240 GHGQVQGRGQ GHGQVQGRGQ GHGGSAPAYG PQSNSFKTKI CENFTKGTCT FGDKCHLAHG 300 ETELRKSGV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672666.1	1e-137	PREDICTED: zinc finger CCCH domain-containing protein 14
Swissprot	Q7F8R0	8e-91	C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBL	A0A0K9RDP7	1e-126	A0A0K9RDP7_SPIOL; Uncharacterized protein
STRING	XP_010672666.1	1e-136	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	7e-69	C3H family protein