PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9036.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 284aa    MW: 31132.8 Da    PI: 7.9891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9036.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-091865146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     + rWT+eE +++  a + +  +   +W+++a++++ g+t  ++ + + +
        Dca9036.1 18 KSRWTKEENKQFESALAVFDEEtpdRWSKVASMLP-GKTVFDVMNQYED 65
                     68******************99*************.******9999865 PP
2Myb_DNA-binding40.84.9e-13144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
        Dca9036.1 144 PWTEDEHRRFLLGLQKHGKGDWRNISRNFVMSKTPTQVASHAQKY 188
                      8*****************************899***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-61768IPR009057Homeodomain-like
SMARTSM007179.0E-101769IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-121871IPR009057Homeodomain-like
PfamPF002492.6E-71865IPR001005SANT/Myb domain
PROSITE profilePS500907.2361867IPR017877Myb-like domain
CDDcd001672.08E-72067No hitNo description
PROSITE profilePS5129416.12137193IPR017930Myb domain
SuperFamilySSF466891.0E-16138193IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-18140192IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-10141187IPR009057Homeodomain-like
SMARTSM007171.0E-10141191IPR001005SANT/Myb domain
PfamPF002495.7E-11144188IPR001005SANT/Myb domain
CDDcd001672.65E-9144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGAIYEATND WYLVDGCKSR WTKEENKQFE SALAVFDEET PDRWSKVASM LPGKTVFDVM  60
NQYEDLIKDV GDIEAGLVPN PGYLSSPFTL EWVDNGGGGS CRFDGFRKRS CGGGGGGGGG  120
VGVGVGVGVS LARAHECDRK KGVPWTEDEH RRFLLGLQKH GKGDWRNISR NFVMSKTPTQ  180
VASHAQKYFL RQNSGGKDKR RPSIHDITTA NISDSSSTGL SDTDQKPKFP LDHSGSFTSL  240
QKSINVMPKM LMDLGNSEAF TVFYPRDRHN PFSAAFQGAY VGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-151686676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732413.11e-122transcription factor DIVARICATA-like
SwissprotQ8S9H72e-80DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RI921e-117A0A0K9RI92_SPIOL; Uncharacterized protein
STRINGXP_010690085.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]