PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca8837.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 461aa    MW: 52430.3 Da    PI: 5.5324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca8837.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.42.7e-76444582373
       GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar..svselykalppsetsekn......sseelaalkl..fsevsP 89 
                ++ Ll+cA+a+++ +d + aq+lL+ l+++  s + d++qRl+  f++AL  r +   + + +y++ +   + +++        ++l+ l++  f++++P
  Dca8837.1  44 EQFLLHCADAIENnDDPTSAQQLLCVLNNIsPSGNNDSNQRLTRAFLRALILRATLnpTYKFIYDSNNDLYSLSSSshcgnyNNNKLSLLEVanFVHLTP 143
                688*********935567***********9445555*************977655412666666665332222222235555444444445588****** PP

       GRAS  90 ilkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg....skeeleetgerLakfAeelgvp 175
                +++f++ + N +I++ave+          +Hi+D++i+q++Q p+L++ +++R    ++pp +R+T+ +  e++    +  ++e +g rL +fA++ gv 
  Dca8837.1 144 WYRFGFTASNLMIMDAVEKYnngpsnsLIIHIVDISITQCMQIPTLIDLISTRFqppQSPPFVRLTVGVVTEHVppmfNCVSYEDVGLRLINFARSRGVV 243
                ******************987777653457***********************8566779******766656668899999******************* PP

       GRAS 176 fefnvlvakrledl..eleeLrvkp.............gEalaVnlvlqlhrlldesv...sleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                +efnv++++ l+ +   +++ r ++             +E+l+Vn+++ lh+l +++    +++s+r+ +Lk +++l P++v++ve+++d +s++++er+
  Dca8837.1 244 LEFNVVHTTPLDGFasLVDQVRHQQhhggnlhypndvtQEMLVVNCQMTLHYLQQHDEfgnDITSPRSMFLKEIRNLDPDMVIIVEEDVDFTSNNLVERL 343
                *****955544444222333333333333444445999***************987752225666*********************************** PP

       GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse.kaakqaklllrkvksdgyrveeesg 356
                 +a++y++  fd+l++ lp+ ++er  +E+  + ++i+nv++ eg +r+er+e  ++W er+ eaGF++v ++e +aa+++k+++ +++  g+  ++e++
  Dca8837.1 344 KSAFNYFWIPFDTLDTFLPKGNKERECYEAD-ICWKIENVITYEGGQRVERQEPWRRWVERMVEAGFRTVVVGEeEAAAEVKAVVGEHG-VGWGSKKEED 441
                *******************************.*************************************99976268899********9.6688889999 PP

       GRAS 357 slvlgWkdrpLvsvSaW 373
                 lvl+Wk++++ ++SaW
  Dca8837.1 442 HLVLTWKGHNVAFASAW 458
                9**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.27917439IPR005202Transcription factor GRAS
PfamPF035149.5E-7444458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLNKTPQTST IPTTFATKPW HTFPTQSKLC VPNNYLSGNT NCIEQFLLHC ADAIENNDDP  60
TSAQQLLCVL NNISPSGNND SNQRLTRAFL RALILRATLN PTYKFIYDSN NDLYSLSSSS  120
HCGNYNNNKL SLLEVANFVH LTPWYRFGFT ASNLMIMDAV EKYNNGPSNS LIIHIVDISI  180
TQCMQIPTLI DLISTRFQPP QSPPFVRLTV GVVTEHVPPM FNCVSYEDVG LRLINFARSR  240
GVVLEFNVVH TTPLDGFASL VDQVRHQQHH GGNLHYPNDV TQEMLVVNCQ MTLHYLQQHD  300
EFGNDITSPR SMFLKEIRNL DPDMVIIVEE DVDFTSNNLV ERLKSAFNYF WIPFDTLDTF  360
LPKGNKEREC YEADICWKIE NVITYEGGQR VERQEPWRRW VERMVEAGFR TVVVGEEEAA  420
AEVKAVVGEH GVGWGSKKEE DHLVLTWKGH NVAFASAWIP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-353246176475Protein SHORT-ROOT
5b3h_B2e-353246122421Protein SHORT-ROOT
5b3h_E2e-353246122421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679612.11e-161PREDICTED: scarecrow-like protein 32
TrEMBLA0A1U8K9H61e-156A0A1U8K9H6_GOSHI; scarecrow-like protein 32 isoform X1
STRINGXP_010679612.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein